Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00248 ATGTTCACTGGTGGTGGCGAATCAACGTCAGGGATTGTGCTATGGGGGATGGCAGAATTGGTAAAGAACCCAAAGGCTATGGAAGAAGCACAAGCTGAGGTAAGAAGGGTGTTTGATACCAAGGGATATGTGGAAGAGACAGAGTTGCACCAATTGATATACTTAAAGTCCATCATCAAAGAAACCCTGAGGCTACATCCAATTGTACCATTGTTAATTCCTAGAGAAAGTAGGGAGAGATGCCAAATCAATGGATATGAGATACCAGCTAAGAGCAAGGTCATTGTGAATGCTTGGGCAATTGGAAGAGATCCCAAGTATTGGGCTGAAGCTGAGAGTTTTAAACCTGAGAGATTTCTTAATAGTCCAATTGATTTCAGAGGCACAGACTTTGAATATATCCCATTTGGTGCTGGAAGAAGGATGTGCCCAGGTATTGCATTTGCCGTACCCACCATTGAGTTGCCACTTGCTCAGTTACTTTACCATTTTGATTGGAAGCTTCCCAATAGAATGAAGAATGAAGAACTTGCATGGATGAGTCATTTACATTTACTATAA 561 0.4171 MFTGGGESTSGIVLWGMAELVKNPKAMEEAQAEVRRVFDTKGYVEETELHQLIYLKSIIKETLRLHPIVPLLIPRESRERCQINGYEIPAKSKVIVNAWAIGRDPKYWAEAESFKPERFLNSPIDFRGTDFEYIPFGAGRRMCPGIAFAVPTIELPLAQLLYHFDWKLPNRMKNEELAWMSHLHLL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00248 186 PANTHER OS08G0105600 PROTEIN 1 177 - -
Rops9g00248 186 Pfam Cytochrome P450 1 176 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops9g00248 186 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 136 145 IPR017972 GO:0005506|GO:0016705
Rops9g00248 186 Coils Coil 182 186 - -
Rops9g00248 186 Gene3D Cytochrome P450 1 183 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops9g00248 186 SUPERFAMILY Cytochrome P450 1 173 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops9g00248 186 PRINTS P450 superfamily signature 57 68 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops9g00248 186 PRINTS P450 superfamily signature 4 21 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops9g00248 186 PRINTS P450 superfamily signature 134 143 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops9g00248 186 PRINTS P450 superfamily signature 143 154 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops9g00248 186 PRINTS E-class P450 group I signature 56 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops9g00248 186 PRINTS E-class P450 group I signature 13 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops9g00248 186 PRINTS E-class P450 group I signature 97 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops9g00248 186 PRINTS E-class P450 group I signature 133 143 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops9g00248 186 PRINTS E-class P450 group I signature 143 166 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops9g00248 186 FunFam Predicted protein 2 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00248 Rops-Chr9 3009335 3009895 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00248 1 177 Cytochrome P450 AT3G26230 50.279 1.13e-66 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00248 - - gmx:606548 317.39