Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00247 ATGGATGAATCCAAGGAGAAATCCAATAACACCCTGTTTACAATGACTATGTCTTGTTCTCTTGGTGTTTCTGTTCTTCTCTGTCTATTTAATTACTTCTACTGGTATAGAAGTGGTTGGTCAGAAGAAAAGCCAGTGACCCTTTTGGATTTCGTGCTCAAAATAGTTGCTTCGGGTGTTGTTTGTGGTTACTTGCATAAGGGGTTCTTCAGTTCAGGTGAAAGAAGACTTCCATTCTTCTTCAGAGCTTGGTGCGCTTTCTACCTCTTTATTTCCTGTTATTGCATCGTAGGGGACATTGTTGTTATATTTGAAAACCAGGTTGCATTACCAGCTCTGCGCATAGTTTCTGATGTGGTATCCGCTTGTGTTGGTTTATTCTTCTGTTATGTGGGGTATATTATGAAAAATGAGGGTGAAGATAGCAGTCTTCAGGAACCTCTTTTGGACGGTGATATATCACAAGTTGGTAATGCCTCGGGGTCAAAAGAGACAAAGGGGGGTGACACTGTTACCCCTTTCTCAAATGCTGGAATTTTCAGCATTCTTACCTCCTCTTGGATGGGTTCTCTTATGGCTGTTGGCAATAAGAAGACCTTAGACCTTGAGGATGTCCCACAACTAGACAGCAGAGACAGTGTTGTTGGAGCTTTTCCAACTTTCAATGATAAACTTGAGGCTAATTGTGGTGCAATTAACAGCTTGACCACATTTCAGCTTGTGAAGTCATTAGTAATCTCAGCGTGGAAAGAGATTCTTTTTGCGGTTTTTCTTGCATTGTTAAAGATGTTGGCTTCTTATGTTGGTCCTTATCTTATGAATGCTTTTGTTCAATATCTTGGTGGACAAAGGCAATACGAAAATCAGGGCTATTTCTTGGTTTCTGCATTTTTCTTTGCAAAGCTTGTAGAGTCCCTTTCGCAAAGACATTGTTTCTTTAGGTTGCAGCAAGTTGGAATTCGAATCCGATCACTGCTTGTGACAATGATATATAATAAAGCCTTGACCATTTCATGTCAATCAAAGAGGGGCCACACTTCTGGGGAAATGATCAATCTCATGACTGTTGATGCTGAAAGAGTTGGCATCTTCAGTTGCTACGTGCATGATTTGTGGATAGTACCTCTGCAAGTTTCATTAGCCTTGTTGATTTTGTATAAAACCCTTGGGCTTGCTTCGATTGCTGCTCTTGTGGCAACTGTCATTGTTATGCTGGCAAATATTCCCTTGGGATCATTGCAAGAGAAGTTTCAAAATAAGTTGATGGAGTCTAAGGATACAAGAATGAAGACCACTTCTGAGATTTTAAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACTGAGCTCAGGAACGCAGAGCAAGGCTGGTTAAGAAAATTTGTTTATACTTCAGCTGTGACTACATTTGTATTTTGGGGTGCCCCCACATTTGTATCTGTGGTTACTTTCGGTACTTGTGTGCTTTTAGGGATCCCACTTGAATCAGGGAGGATCTTGTCTGCACTTGCAACATTCCGGATTCTTAAAGAGCCCATTTATAATCTTCCAGAAACAATTTCAATGATAGCGCAAACTAAAGTTTCTCTTGGCAGGATTGTGTCATTCCTTTGTCTTGATGACTTGCAGTCTGATGTTGTAGAAAAGCTTCCTTGGGGTAGTTCTGTCACAGCAATTGAAGTAGTCAACGGAAACTTTTCTTGGGATTTATCTTCCCCTAATCCAACATTGCAAAACATAAATCTCAGAGTGTCGCATGGCTTGAGGGTCGCTGTCTGTGGTACCATTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCAGGTATCCTTAAGGTTTGTGGAACAAAGGCCTATGTTGCTCAGTCACCATGGATACAAAGCGGCATGATAGAGGATAATATATTGTTTGGTAGACACATGGATAGGGAAAGGTATGAGAAGGTACTTGAAGCCTGTTCCCTGAAGAAGGATCTGGAGATTTTGTCATTTGGTGATCAGACGATTATAGGAGAGCGTGGAATCAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCACGTGCTCTTTACCAAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGGTCTCACCTTTTTAAGGAATGCTTGCTGGGCCTTTTAAGTTCAAAAACAGTGCTTTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGACCTTATATTGGTCATGAAAGATGGGAAAATTACGCAACGTGGAAAGTATACCGATCTGCTTAACAGTGGAACTGATTTTATGGAACTTGTTGGTGCACACAGAAAAGCTATGTCTACACTTGATTCATATAATGAAACAAGTACCTTGGAACAAGATGTAAATGTCTCTAGCACTCACGGTGTCAAAGAAAAAGAGCCAAACAATGATGAGGAAAATGTTAAAGCAGACAACAAAGGTGAACCAAAAGGCCAGTTTATTCGAGAAGAACAAAGAGAGAAAGGTAAAGTTGGGTTTTCAGTCTACTGGAAGTATATCACAACTGCATATGGAGGAGCTCTTGTACCATTCATATTATTGTCTCAGATTCTCTTTCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCTATTTCAGCAGATGTGGAGCCACCTGTTGGAGGAACGACCCTTATAGTTGTCTATGTTGGTTTGGCCATTGGAAGTTCTTTGTGCATCCTTACCAGAGCAATGTTACTTGTCACAGCTGGTTATAAGACAGCTACTCTACTGTTCAATAAAATGCACTTCTGCATTTTCCGTGCCCCGATGTCATTTTTTGATTCCACTCCAAGTGGGCGAATCCTTAACAGAGCTTCTACTGACCAAAATGCAGTGGATACAGACATTCCTTCTCAAATTGGGTCTTTTGCCTCCCTCACAATCCAGCTACTGGGAATTATAGCAGTGATGTCTCAGGTTGCATGGCAGGTTTTCATTGTCTTTATACCCGTGATAGCTGTCAGCATTTGGTATCAGCAATATTATTTGTCATCAGTCCGAGAACTATCACGTTTAGTTGGAGTATGCAAAGCCCCAATCATTCAACACTTCACTGAAACAATTTCTGGTACTTCAACCATTAGAAGCTTTGATCAGCAGTCAAGATTTCGGGAAACAAATATGAAACTGACTGATGGGTATTCTCGGCCAAAGTTCAATATTGCTGGTGCTAGGGCATGGTTATGCTTCCGCCTAGATATGTTGTCTTCTATCACATTTGCCTTTTCCTTGATATTCTTGATATCTATTCCACAGGGAGTCATAGATCCAGGCATTGCTGGTTTAGCTGTTACCTACGGACTTAGTTTAAACATGATACAAGCTAGGGTGATATGGAATCTTTGCAACTTGGAGAACAAAATTATATCAGTTGAGAGAATACTTCAGTATACTTGCATTCCTAGTGAGCCCCCCCTTGTTGTAGAAGAAAATCAGCCAGATCCTTCTTGGCCTTCATATGGTGAGGTTGATATACAGGACTTACAGGTTCGTTATGCTCCTCATCTTCCACTTGTGTTGCGTGGCCTTACTTGCACATTTCATGGAGGACAGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAGTCAACTCTCATACAAACACTTTTCCGAATTGTTGAGCCTACTGCTGGGAAAATTATGATTGACAACATCAACGTCTCTTCAATTGGACTTCATGATTTGAGGTTTAGACTATGCATTATTCCTCAGGATCCAACCATGTTTGAGGGGACAGTGAAAAATAATCTGGACCCCCTGGAAGAGTACACTGATGAACAAATTTGGGAGGCCTTGGATAAGTGTCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTAGACTCTGCAGTAAGTGAGAACGGTGAGAATTGGAGCATGGGTCAAAGACAGTTGGTGTGCCTTGGTAGGGTGCTGCTTAAGAAAAGCAAGGTTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTATGGATAATTTGATTCAGCAAACTCTCAGGCAGCATTTCTCTGACTCAACAGTCATTACCATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTGCTTCTTAATCAAGGACTTATTGAGGAGTATGACTCCCCAACAACATTGCTAGAGGATAAGTCATCATCTTTTGCTCAACTTGTTTCAGAGTATACCTTAAGGTCCAAGTCCGGTTTTGAGAAATCTGTTGAACACTGA 4326 0.4087 MDESKEKSNNTLFTMTMSCSLGVSVLLCLFNYFYWYRSGWSEEKPVTLLDFVLKIVASGVVCGYLHKGFFSSGERRLPFFFRAWCAFYLFISCYCIVGDIVVIFENQVALPALRIVSDVVSACVGLFFCYVGYIMKNEGEDSSLQEPLLDGDISQVGNASGSKETKGGDTVTPFSNAGIFSILTSSWMGSLMAVGNKKTLDLEDVPQLDSRDSVVGAFPTFNDKLEANCGAINSLTTFQLVKSLVISAWKEILFAVFLALLKMLASYVGPYLMNAFVQYLGGQRQYENQGYFLVSAFFFAKLVESLSQRHCFFRLQQVGIRIRSLLVTMIYNKALTISCQSKRGHTSGEMINLMTVDAERVGIFSCYVHDLWIVPLQVSLALLILYKTLGLASIAALVATVIVMLANIPLGSLQEKFQNKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITELRNAEQGWLRKFVYTSAVTTFVFWGAPTFVSVVTFGTCVLLGIPLESGRILSALATFRILKEPIYNLPETISMIAQTKVSLGRIVSFLCLDDLQSDVVEKLPWGSSVTAIEVVNGNFSWDLSSPNPTLQNINLRVSHGLRVAVCGTIGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGMIEDNILFGRHMDRERYEKVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVLYVTHQVEFLPAADLILVMKDGKITQRGKYTDLLNSGTDFMELVGAHRKAMSTLDSYNETSTLEQDVNVSSTHGVKEKEPNNDEENVKADNKGEPKGQFIREEQREKGKVGFSVYWKYITTAYGGALVPFILLSQILFQVLQIGSNYWMAWATPISADVEPPVGGTTLIVVYVGLAIGSSLCILTRAMLLVTAGYKTATLLFNKMHFCIFRAPMSFFDSTPSGRILNRASTDQNAVDTDIPSQIGSFASLTIQLLGIIAVMSQVAWQVFIVFIPVIAVSIWYQQYYLSSVRELSRLVGVCKAPIIQHFTETISGTSTIRSFDQQSRFRETNMKLTDGYSRPKFNIAGARAWLCFRLDMLSSITFAFSLIFLISIPQGVIDPGIAGLAVTYGLSLNMIQARVIWNLCNLENKIISVERILQYTCIPSEPPLVVEENQPDPSWPSYGEVDIQDLQVRYAPHLPLVLRGLTCTFHGGQKTGIVGRTGSGKSTLIQTLFRIVEPTAGKIMIDNINVSSIGLHDLRFRLCIIPQDPTMFEGTVKNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTAMDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLNQGLIEEYDSPTTLLEDKSSSFAQLVSEYTLRSKSGFEKSVEH* 1442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00247 1441 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Rops9g00247 1441 MobiDBLite consensus disorder prediction 815 840 - -
Rops9g00247 1441 CDD ABCC_MRP_domain1 567 767 - -
Rops9g00247 1441 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 567 790 IPR003439 GO:0005524
Rops9g00247 1441 SMART AAA_5 594 767 IPR003593 GO:0016887
Rops9g00247 1441 SMART AAA_5 1217 1402 IPR003593 GO:0016887
Rops9g00247 1441 CDD ABC_6TM_ABCC_D2 872 1166 IPR044726 GO:0140359
Rops9g00247 1441 CDD ABC_6TM_ABCC_D1 254 541 IPR044746 GO:0140359
Rops9g00247 1441 Gene3D - 555 815 IPR027417 -
Rops9g00247 1441 Pfam ABC transporter transmembrane region 253 496 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00247 1441 Pfam ABC transporter transmembrane region 874 1117 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00247 1441 Pfam ABC transporter 585 719 IPR003439 GO:0005524
Rops9g00247 1441 Gene3D ABC transporter type 1, transmembrane domain 834 1172 IPR036640 GO:0005524|GO:0016020
Rops9g00247 1441 Gene3D ABC transporter type 1, transmembrane domain 232 549 IPR036640 GO:0005524|GO:0016020
Rops9g00247 1441 FunFam ABC transporter C family member 10 236 549 - -
Rops9g00247 1441 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 174 1426 - -
Rops9g00247 1441 CDD ABCC_MRP_domain2 1189 1409 - -
Rops9g00247 1441 MobiDBLite consensus disorder prediction 812 840 - -
Rops9g00247 1441 ProSitePatterns ABC transporters family signature. 692 706 IPR017871 GO:0005524|GO:0016887
Rops9g00247 1441 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 874 1154 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00247 1441 FunFam ABC transporter C family member 5 552 799 - -
Rops9g00247 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 565 789 IPR027417 -
Rops9g00247 1441 SUPERFAMILY ABC transporter transmembrane region 872 1173 IPR036640 GO:0005524|GO:0016020
Rops9g00247 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1182 1423 IPR027417 -
Rops9g00247 1441 Gene3D - 1174 1427 IPR027417 -
Rops9g00247 1441 SUPERFAMILY ABC transporter transmembrane region 243 541 IPR036640 GO:0005524|GO:0016020
Rops9g00247 1441 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1191 1425 IPR003439 GO:0005524
Rops9g00247 1441 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 253 533 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g00247 1441 FunFam ABC transporter C family member 3 1174 1426 - -
Rops9g00247 1441 Pfam ABC transporter 1209 1356 IPR003439 GO:0005524
Rops9g00247 1441 FunFam ABC transporter C family member 5 835 1172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00247 Rops-Chr9 3002220 3008039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00247 563 797 Calmodulin-binding Proteins AT2G36910 31.641 4.36e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00247 - K05666 gmx:100777836 2398.24