Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00229 ATGGCATTAACTTGTTTGAGAGCTGTGGCTAGAGAAGGGGTGGCTAAGATGAGGTTATCAGTTTTTGAAGTTTTGGTTTTGGTTTCTCCATTTTTGTTGTTAGTGTGTGTTCAGGTGCAAGGTGATAGTACTACAAACTTCATTACTTGGGATGACTTCATGGTGGATGAAGAGAGTGTAGCCTCTAATGTTAGTGGTCATGTTATTGTGGTTGATCAGAATGGTAATGGAGATTCAACGACTGTTCAAGGGGCTGTAGATATGGTTCCAGAAGACAACACAGAAAGGGTGAAGATATATATTTACCCGGGAACTTACAGAGAAAGAGTGCATGTGCCAAAAAGCAAGCCATTTATTTCATTTATAGGTAAACCCAACATTACAGTCAATGCCAGTGAGCTAAATGTAACGGACATTGCCAATGCCATACCTATCATCACAAATAGTACTAAGGCATCAGACAAAGGCTCAGATGGACAAGAAATGGGCACAGTTAGTACAGCAACTGTATGGATAGAATCTGATTTCTTCTGTGCAACTGTTATTACTATTGAGAATATGGTTGATAAAGATGCAGATGGACGTCAAGCGGTAGCATTGCGGGTAGATGGGGATAAAGCTGTATTCTATCAAGTTAGGCTTGTGGGGGAGCAAGACACCCTCCTAGATAACACAGGAACACATTATTTCTACCGAAGTTACATTCAAGGATCCGTTGATTTTATATGTGGCCAAGCAAAATCATTGTTCCATGAGTGTTTACTGTACTCTGTAGCTGAATATTGGGGAGCAATTGCAGCTCATCACAGGGATTCAGCTGATGAAGATACAGGATTTTCATTTGTTGGTTGCACAATCAAAGGAAATGGTAGTATCTTACTTGGGAGAGCTTGGGGGGAGTATGCAACAACAATATATTCCTACTGTGACATGGATGATATAATTAGCCCCATGGGATGGAGTGATTGGGATATTCCATCTAGGCAGAAGAATGCTATGTTTGGAGAGTATCAGTGTTCAGGAAAAGGATCAAATAGAACTGGAAGGGTGGAATGGTCAAAAGCTTTAAGCAGTGAGGAAGCTAGACCTTTCCTGGGCAGAGATTACATATATGGAGACAGATGGCTTAGACTACAATAG 1140 0.4088 MALTCLRAVAREGVAKMRLSVFEVLVLVSPFLLLVCVQVQGDSTTNFITWDDFMVDEESVASNVSGHVIVVDQNGNGDSTTVQGAVDMVPEDNTERVKIYIYPGTYRERVHVPKSKPFISFIGKPNITVNASELNVTDIANAIPIITNSTKASDKGSDGQEMGTVSTATVWIESDFFCATVITIENMVDKDADGRQAVALRVDGDKAVFYQVRLVGEQDTLLDNTGTHYFYRSYIQGSVDFICGQAKSLFHECLLYSVAEYWGAIAAHHRDSADEDTGFSFVGCTIKGNGSILLGRAWGEYATTIYSYCDMDDIISPMGWSDWDIPSRQKNAMFGEYQCSGKGSNRTGRVEWSKALSSEEARPFLGRDYIYGDRWLRLQ* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00229 379 Pfam Pectinesterase 69 373 IPR000070 GO:0030599|GO:0042545
Rops9g00229 379 Gene3D - 67 379 IPR012334 -
Rops9g00229 379 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 57 377 - -
Rops9g00229 379 FunFam Pectinesterase 64 378 - -
Rops9g00229 379 SUPERFAMILY Pectin lyase-like 63 377 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00229 Rops-Chr9 2799388 2801907 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00229 17 330 Carbohydrate Esterase AT5G55590 51.304 3.79e-114 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00229 K01051 - gmx:100775690 605.905