Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00217 ATGGCCAACAATGGTGCAAAGGAGCCCTTGCTGTCAGGATCGCCAGATCCTGCAGCTCAAAAAGCTAAACGGAAGTTAAACAAAAGAAGGTTACTCCGTTCTAGAAGTGCTCCTTACACAGATCTTGATCCTCTTGAGACAAATGGCAATGAATCAATTCCCCGTTCTGAGTCCATATTTGGGAATTTACATCCAAGCCTTAAAAAAGTGGCTTTATGCCTTGCAGTCTATTTAGGTATAGGTGCATTAATATTCTACCTTGTCAGGAATCAGATCAAGGGGTTGAAAACAGATGGAATCCTTGATGCTTTATACTTTACAATTGTGACAATGACCACTGTTGGATATGGAGACCTTGTGCCCAATAGTAACCTTACAAAATTGCTTGCTTGTGCTTTTGTTTTCTCTGGAATGGCATTGATTGGACTAATTCTAAGCAAAGTAGCAGACTATTTGGTTGAGAAACAGGAAGTTTTGTTAGTTAAAGCTATGCACATGAACCAAAAAGCTGGTCCAACTGAAATTTCAAAGGAGGTTGAGATCAATAAAACAAGATACAAATTTATCCTGGTCTTTTCCCTTCTTTTGATTCTCATTATTATGGGGACAATTTTCTTGGTCACTGTTGAGAAATTAGATGTTATTGATGCCTTCTACTGTGTTTGTTCTACAATTACAACCCTGGGTTATGGGGATCATAGTTTCTCAACTCAAGCAGGAAGAATATTTGCCGTGTTTTGGATATTGGCAGGTACTATTACTTTAGCTCAGTTTTTCCTCTATATGGCTGAGCTAAACACTGAAAACAGACAAAAGGCACTAGTCAAGTGGGTTCTTACAAGGAAGATGACCTGTTCAGATTTGGAGGCTGCAGATCTTGATGATGATGGGACTGTTGGGGCTGTTGAATTTGTTATTTTTAAGCTGAAAGAAATGGGGAAGATTAGTCAAGAAGATATATCACTTGTGATTAAGGAGTTTGAAGAGCTTGACTTTGATCAGTCTGGTACACTTTCTGTTTCTGATATAACACTTGCTCAATCATCTTAA 1050 0.3848 MANNGAKEPLLSGSPDPAAQKAKRKLNKRRLLRSRSAPYTDLDPLETNGNESIPRSESIFGNLHPSLKKVALCLAVYLGIGALIFYLVRNQIKGLKTDGILDALYFTIVTMTTVGYGDLVPNSNLTKLLACAFVFSGMALIGLILSKVADYLVEKQEVLLVKAMHMNQKAGPTEISKEVEINKTRYKFILVFSLLLILIIMGTIFLVTVEKLDVIDAFYCVCSTITTLGYGDHSFSTQAGRIFAVFWILAGTITLAQFFLYMAELNTENRQKALVKWVLTRKMTCSDLEAADLDDDGTVGAVEFVIFKLKEMGKISQEDISLVIKEFEELDFDQSGTLSVSDITLAQSS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00217 349 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Rops9g00217 349 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Rops9g00217 349 FunFam Two-pore potassium channel 1 168 276 - -
Rops9g00217 349 SUPERFAMILY Voltage-gated potassium channels 175 267 - -
Rops9g00217 349 Pfam Ion channel 73 153 IPR013099 -
Rops9g00217 349 Pfam Ion channel 194 265 IPR013099 -
Rops9g00217 349 Gene3D - 172 276 - -
Rops9g00217 349 FunFam Calcium-activated outward-rectifying potassium channel 1 64 159 - -
Rops9g00217 349 MobiDBLite consensus disorder prediction 1 34 - -
Rops9g00217 349 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Rops9g00217 349 PRINTS Two pore domain K+ channel signature 226 235 IPR003280 GO:0005267|GO:0016020|GO:0071805
Rops9g00217 349 SUPERFAMILY Voltage-gated potassium channels 67 163 - -
Rops9g00217 349 SUPERFAMILY EF-hand 251 344 IPR011992 -
Rops9g00217 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 70 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Rops9g00217 349 Gene3D - 64 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00217 Rops-Chr9 2743773 2746258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00217 54 349 Ion Channels AT5G55630 65.878 1.73e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00217 K05389 - gmx:100777388 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00217 9 2743773 2746258 Rops9g00217 9 2743773 2746258 ECH