Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00212 ATGGCGGAATCGGATAACGAATCGGGAGGAGCACAGAACGCAGGGAACAGTAGCGAGTTATCGCCTCGGGAACAGGACCGTTTCTTGCCGATAGCGAACGTGAGTAGGATCATGAAGAAGGCACTTCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAAACGGTGCAGGAATGTGTATCGGAGTTTATAAGCTTCATCACAGGCGAGGCTTCCGATAAGTGTCAGAGGGAGAAGCGGAAGACGATAAACGGCGACGACTTGCTTTGGGCCATGACTACCTTGGGGTTTGAAGAATACGTGGAGCCTCTCAAGATATACCTTCAGAGGTTCAGGGAGATCGAGGGAGAGAAGACCGTGGCGGCGCGTGACAAGGACGCCATCTCTGTTCCTTCCGCCGGTGGCGGCTACGACTATGCTACGACGGGGATGATGATGATGAATCAGCAGGCCCACGTGTACGCGTCTCCTGGGTTCCATCAAGTGGCTATCAGTAAGGGTGGGCCCAGTTATCCGGGTGCCGGATCTAATGCGGGTAGACCCAGGTAG 549 0.5519 MAESDNESGGAQNAGNSSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREIEGEKTVAARDKDAISVPSAGGGYDYATTGMMMMNQQAHVYASPGFHQVAISKGGPSYPGAGSNAGRPR* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00212 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Rops9g00212 182 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Rops9g00212 182 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Rops9g00212 182 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Rops9g00212 182 SUPERFAMILY Histone-fold 25 131 IPR009072 GO:0046982
Rops9g00212 182 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 142 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops9g00212 182 Gene3D Histone, subunit A 16 151 IPR009072 GO:0046982
Rops9g00212 182 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops9g00212 182 MobiDBLite consensus disorder prediction 1 23 - -
Rops9g00212 182 MobiDBLite consensus disorder prediction 1 25 - -
Rops9g00212 182 FunFam Nuclear transcription factor Y subunit B-3 17 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00212 Rops-Chr9 2694978 2695526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00212 1 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.246 5.86e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops9g00212 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00212 K08065 - gmx:100813580 282.722