Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00206 ATGAAGAAAATTCTTCCATCACATGCAAGGATCACTGATGAATGCAAGGAAACAATGCTTGAGTGTGCTACTGATTTCATTTGTTTCTTCACTGGGGAAGCTAACCTTCACTGCCAAATGGATCAAAGAAAAACCATCACTGCTGAAGATTTGATATGGACTTTTAGGAAGTTTGGTTTTGACAATTATGCTGAGCTTCTCACTCGTTACCTCCAACGTTATCGTCAACATGAAGCTGCTACTCGTTGGGGTTATGTTCCAACAACACAACCAAGAGTTACATATAATAATAATAATGCTGTGCCACCACTACCACCACCAACTTTCCCTGTTGCTCCAAACCCAACTGAAATGGATATGGGTGGGTTCTATCAAGATCAATCAAGTGCTGATGGCTCCAATGTTGAGTTTGATCCTATTGTTGCTTATCTCAATAGTGACAACTTCTTTGATAACTGA 459 0.3987 MKKILPSHARITDECKETMLECATDFICFFTGEANLHCQMDQRKTITAEDLIWTFRKFGFDNYAELLTRYLQRYRQHEAATRWGYVPTTQPRVTYNNNNAVPPLPPPTFPVAPNPTEMDMGGFYQDQSSADGSNVEFDPIVAYLNSDNFFDN* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00206 152 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 100 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops9g00206 152 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Rops9g00206 152 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Rops9g00206 152 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Rops9g00206 152 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 53 IPR003958 -
Rops9g00206 152 Gene3D Histone, subunit A 1 92 IPR009072 GO:0046982
Rops9g00206 152 SUPERFAMILY Histone-fold 1 96 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00206 Rops-Chr9 2579798 2580256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00206 1 130 CCAAT-HAP3 Transcription Factor Family AT1G21970 43.262 3.56e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops9g00206 CBFD_NFYB_HMF 1.1e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00206 K08065 - atri:130824101 114.775