Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00183 ATGAATTCTCGGTGCTTCCTTCAACCTGAGGCCTTGTTTAACTCAAGTAGCATGGTTCCATTTCCTTCAAATTCTTCTGCAGCAGAAGATAGAGTGACCAGTGCTCGAAATAGGCCTCCACGTGTCTCCCCACCTTCATTTTTGGTTCGGTTGGTTATAAGAATACCTAGAGCAAGATGGTTTATCTTCTTAAGAAGAGTATTCCACTACCAAAATGGTTCAAGGTCCAATCTTGGCTCTAATCCCTTCAATTCTAGCACTTGGATGATGTTGGAGTTTATTGCTTTAATTGTCCAAATAACCATTACAACATTCACTTTGTCCATTTCAAAGAGGGAGAGACCTGTTTGGCCTATGAGGATATGGATATCTGGTTATGATATTGGATGTGTTCTTAATCTGCTGTTACTTTATGGGCGCTACCGTCAAATTTATCTGACTCAAGGAGATACTCTCAGCCTTTCTGATATGGAACAGCAGAGAAACAATGAAGAAACCAGTGTATACAGGATGTCACACTTGATGAATAAATGCCGGACTTCACTAGAGCTTTTCTTTGCCATATGGTTTGTGATGGGCAATGTTTGGGTCTTTGACTCACGTTTTGGATCTTTTCATCAAGCTCCAAAACTCAATGTGCTATGCATCACCCTGCTTGCTTGGAATGCAATCTGCTACTCTTTCCCTTTCTTACTGTTTCTACTCTTATGCTGCTGCATGCCTCTACTTAGCAGCCTCCTTGGTTACAACATGAACATGGCCTCTTCTAATAGAGGAGCATCTGATGATCAAATTTCACAACTTCCAAGTTGGAGACATAAAGAAGCCCATAACAAATTAGAGCTTGGCAATGACTCTGAAAGCACTGAAAATTTGATCAATGAAGATTCAGAATGCTGCATTTGCATAGCCAAGTACAAAGACAGAGAAGAAGTCAGACAATTGCCTTGTTCCCATATGTTCCACCTAAAATACCTTCCCTCTCCCCCCTTCTTGTTGAGAATCCAAAGCCTCTTCTGTGAAGCAATCAATTCATTTGCTGAAGGACATCTTACATTCAACATGCCTTCTCAAACACCTAGGAAAAAGATGGAGGGAAAGTCCCATCGGATCAATACAATACAACTGAATGGTCTCAAAATAAAAATCTCGGAATTGAATTTGGATGATATAAAGAAGCATTCACATATGCTTGAGTCACCAACAACATCTAAAGCAGTAATAAGGAGATCTTCTAGTGAGAGGTGGAATTGTCTATGCTCACCCACCAAACATGTTGGCTCCTTCAGGTGCCGCCACCACCGTTCTGCTGGGATGCACTATGCTAGGTCTATTGGCTCCAACCTCTCTTCAATGGGCTCCAAAGACTCACTCCAAGCTCAATAA 1386 0.4141 MNSRCFLQPEALFNSSSMVPFPSNSSAAEDRVTSARNRPPRVSPPSFLVRLVIRIPRARWFIFLRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALIVQITITTFTLSISKRERPVWPMRIWISGYDIGCVLNLLLLYGRYRQIYLTQGDTLSLSDMEQQRNNEETSVYRMSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFHQAPKLNVLCITLLAWNAICYSFPFLLFLLLCCCMPLLSSLLGYNMNMASSNRGASDDQISQLPSWRHKEAHNKLELGNDSESTENLINEDSECCICIAKYKDREEVRQLPCSHMFHLKYLPSPPFLLRIQSLFCEAINSFAEGHLTFNMPSQTPRKKMEGKSHRINTIQLNGLKIKISELNLDDIKKHSHMLESPTTSKAVIRRSSSERWNCLCSPTKHVGSFRCRHHRSAGMHYARSIGSNLSSMGSKDSLQAQ* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00183 461 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 16 325 - -
Rops9g00183 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 328 IPR013083 -
Rops9g00183 461 SUPERFAMILY RING/U-box 290 323 - -
Rops9g00183 461 Pfam RING-like zinc finger 298 324 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00183 Rops-Chr9 2270226 2275431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00183 25 324 C3H Transcription Factor Family AT4G26580 65.116 2.11e-131 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00183 - - gmx:100813670 558.91