Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops9g00177 | ATGGGTTTTCCCCCTCTACAATCCCAAAACAGATCACCCCATCTCTTTGCAATGTCTGGAAGCTTAAGCAATCTTTCATTTTCTCCCATAATCTTCTCCCTCACCTTGCTTCTCTCAATAAACTCTCTTTTCTTTCCATGTTGTTACTCCCTTAATGAACAAGGCCAAGCTCTTATAGCATGGAAGAACAGTTTAAACAGTACTACAGATGCATTAGCATCTTGGAATCCTTCAAACCCAAGCCCATGCAACTGGTTTGGGGTGCACTGCAACTTACAAGGGGAGGTGGTGGAGATAAAACTGAAATCAGTGAACTTGCAAGGCTCATTACCTTCAAATTTTCAGCCTCTCAGGTCCTTGAAGGTTCTTGTCCTCTCTTCAACCAACATCACAGGCAGGATTCCAAAAGAAGTTGGAGACTATCAAGAGCTCATTTTCATTGATCTCACTGACAATTCTCTCTTGGGTGAAATCCCAGAAGAAATTTGCAAGCTAAGCAAACTGCAGAGTTTAGCTCTCCATACAAACTTTCTTGAAGGCAATATTCCATCCAAAATAGGAAAGTTATCAAGTCTTGTGAACTTGACACTCTATGACAATAAACTGAGTGGTAAAATTCCAAAGAGTATTGGCTCTTTAAGCAAGCTTGAAGTATTCAGAGCAGGAGGGAATACAAACCTTAAGGGTGAGCTTCCATGGGATATTGGAAACTGCACCAACTTGGTCATGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAGTCTTCCCTCTTCAATAGGGATGCTGAAAAGAATTCAGACCATATACTTTTACACAACTCAGTTGTCAGGCTCCATCCCTGAAGAGATTGGGGATTGCAGTGAGTTGCAGAACCTGTACTTGCATCAGAACTCAATTTCTGGTTCAATCCCAAGTCAAATTGGGAAGCTCAGCAAACTTCAGAGTCTACTTTTATGGCAAAACAATATAGTAGGTACAATCCCAGAAGAGCTTGGAAGCTGCACAGAGCTACAAGTCATAGACTTGTCAGAAAATCTTCTCACAGGTAGCATACCAAAAAGTTTTGGACAGCTATCAAATCTCCAAGGGCTTCAGCTGAGTGTTAATCAGCTGTCAGGTATTATACCTCCTGAAATTTCAAATTGCACTTCTCTGACTCAGTTGGAAGTTGACAACAATGATATCTCTGGTGAGATTCCTCCTGTTATTGGCAACTTGAGAAGCTTGAACCTGTTCTTTGCCTGGAAGAACAAGCTAACAGGAAAAATCCCAGATAGTCTTGCAGAGTGCAAAGATCTTCAGGCACTTGATCTGTCTTACAACAATTTAATTGGTCCAATACCCAAACAGCTATTTGGGTTGAGGAATCTCACTGAACTGCTGCTTCTTTCCAATGATTTGTCAGGCTATATACCACCTGATATAGGTAACTGCACAAGTCTCTACAGGTTGAGGTTAAACCAGAATAGACTGGCAGGTACCATTCCATCTGAGATCACCAACTTGAAAAATTTGAATTTTTTAGACATGAGCAGCAACCATCTTGTTGGGGAGATTCCTCCAACACTATTCAGATGCCAAAATCTTGAGTTTCTGGACCTCCATTCAAATAGTCTCACTGGTTCAGTTCCAGATAATCTGCCAAAAAGCCTGCAGATAATTGACCTCTCAGACAACAGTCTAACAGGTGCATTGAGTCATTCCATTGGTTCATTAACTGAATTAACCAAACTCAACTTGGGAAAGAATCAGCTCAGTGGAAGAATCCCAGCAGAGATCCTGTCTTGCTCTAAGTTACAACTTCTAGACTTGGGAAGCAATGGTTTCTCTGGAGAAATTCCCAAGGAAGTTGGTCAAATTCCTTCACTAGAAATCTTTCTCAATCTTAGTTGTAACCAGTTTTCTGGTGAAATTCCACCCCGGTTCTCTGGTCTTAGCAAACTTGGAGTACTTGATCTCTCCCACAACAAGCTCTCAGGGAATTTAGATGCTCTGTCTGACCTTCAGAATATTGTTTCCTTAAATGTTTCCTTCAATCACTTCTCTGGTGAATTGCCCAACACCCCATTCTTCAAGAAACTCCCTCCGAGTGATCTCACTGCAAATGATGGTCTTTACATTGCTGGTGGTGTTGTTACTCCAGCTGACAGAAAGGGAGCCAAAGATCACGCCAGATTAGCTCTGAAGATTATAATGTTCATTCTCTTAAGCACAAGTGCAGTACTAGTACTTCTCACAATCCATGTCTTGGTTCGTGCTCATATTGCTAACATAGCACTCATGGGAAATAACAATTGGGTGATGACTTTGTATCAGAAGCTTGAATTTTCTATTGATGATATTGTCCAGAATTTGACATCAGCCAATGTGATTGGCACCGGAAGCTCTGGAGTTGTGTATAAGGTAACAATTCCAAATGGCCAAACACTAGCAGTTAAAAGGATGTGGTCATCAGCAGAATCTGGAGCATTTAGTTCTGAAATTCAGACACTAGGTTCAATCAGACACAACAATATCATCAAGCTTCTGGGTTGGGGATTCAATAAGAATCTGAAGCTTCTGTTTTATGACTACCTCCCTAATGGAAGCCTGAGCTCATTACTTCATGGTTCAGGAGAGGGAAAAGCAAAATGGGAGACCAGATATGAAATCATGTTAGGCCTGGCTCAGGCACTTGAATATTTACACCATGATTGTGTGCCTTCTGTAATGCATGGAGATGTCAAAGCCATGAATGTGTTACTAGGTCCTGGCAATCATCCTTACCTTGCTGACTTTGGCATGGCAAGAATTGCAAGTGAAAATGGTAATAATAATACTAATTCCAAGCCAGTTCAAAGACCCTCCTACCTTGCTGGTTCCTATGGATACATGGCTCCAGAACATGCATCAATGCAGTGGATCACTGAGAAGAGTGATGTTTACAGTTTTGGTGTGGTTCTACTTGAGGTCCTGACAGGAAGGCACCCATTGGACCCAACTCTACCTGGGGGTGTAAACTTGGTTCAGTGGGTTAGGAACCACCTAGCCAGCAATGGAGACCCATCTGACATTCTTGACCCAAAGCTTATTGGGATGACTGTCCCTACCATGCATGAAATGCTACAAACTCTAGCTGTGTCATTTTTATGTGTCAGTACTCAACCTGATGACCGTCCAACAATGAAGGACACTGTTGCAATGCTTAAGGAAATTCGACCTGTTGAGGCCTCAAAGACAGATTTTGATGTATTGAAGGTAGTGAGTGTTAACAGCTCATACTAA | 3264 | 0.4185 | MGFPPLQSQNRSPHLFAMSGSLSNLSFSPIIFSLTLLLSINSLFFPCCYSLNEQGQALIAWKNSLNSTTDALASWNPSNPSPCNWFGVHCNLQGEVVEIKLKSVNLQGSLPSNFQPLRSLKVLVLSSTNITGRIPKEVGDYQELIFIDLTDNSLLGEIPEEICKLSKLQSLALHTNFLEGNIPSKIGKLSSLVNLTLYDNKLSGKIPKSIGSLSKLEVFRAGGNTNLKGELPWDIGNCTNLVMLGLAETSISGSLPSSIGMLKRIQTIYFYTTQLSGSIPEEIGDCSELQNLYLHQNSISGSIPSQIGKLSKLQSLLLWQNNIVGTIPEELGSCTELQVIDLSENLLTGSIPKSFGQLSNLQGLQLSVNQLSGIIPPEISNCTSLTQLEVDNNDISGEIPPVIGNLRSLNLFFAWKNKLTGKIPDSLAECKDLQALDLSYNNLIGPIPKQLFGLRNLTELLLLSNDLSGYIPPDIGNCTSLYRLRLNQNRLAGTIPSEITNLKNLNFLDMSSNHLVGEIPPTLFRCQNLEFLDLHSNSLTGSVPDNLPKSLQIIDLSDNSLTGALSHSIGSLTELTKLNLGKNQLSGRIPAEILSCSKLQLLDLGSNGFSGEIPKEVGQIPSLEIFLNLSCNQFSGEIPPRFSGLSKLGVLDLSHNKLSGNLDALSDLQNIVSLNVSFNHFSGELPNTPFFKKLPPSDLTANDGLYIAGGVVTPADRKGAKDHARLALKIIMFILLSTSAVLVLLTIHVLVRAHIANIALMGNNNWVMTLYQKLEFSIDDIVQNLTSANVIGTGSSGVVYKVTIPNGQTLAVKRMWSSAESGAFSSEIQTLGSIRHNNIIKLLGWGFNKNLKLLFYDYLPNGSLSSLLHGSGEGKAKWETRYEIMLGLAQALEYLHHDCVPSVMHGDVKAMNVLLGPGNHPYLADFGMARIASENGNNNTNSKPVQRPSYLAGSYGYMAPEHASMQWITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGVNLVQWVRNHLASNGDPSDILDPKLIGMTVPTMHEMLQTLAVSFLCVSTQPDDRPTMKDTVAMLKEIRPVEASKTDFDVLKVVSVNSSY* | 1088 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops9g00177 | 1087 | Gene3D | Transferase(Phosphotransferase) domain 1 | 859 | 1083 | - | - | |
| Rops9g00177 | 1087 | Gene3D | Ribonuclease Inhibitor | 626 | 709 | IPR032675 | - | |
| Rops9g00177 | 1087 | Gene3D | Ribonuclease Inhibitor | 449 | 547 | IPR032675 | - | |
| Rops9g00177 | 1087 | Gene3D | Ribonuclease Inhibitor | 349 | 448 | IPR032675 | - | |
| Rops9g00177 | 1087 | Gene3D | Phosphorylase Kinase; domain 1 | 754 | 858 | - | - | |
| Rops9g00177 | 1087 | Pfam | Leucine rich repeat | 336 | 395 | IPR001611 | GO:0005515 | |
| Rops9g00177 | 1087 | Pfam | Leucine rich repeat | 550 | 608 | IPR001611 | GO:0005515 | |
| Rops9g00177 | 1087 | PRINTS | Leucine-rich repeat signature | 645 | 658 | - | - | |
| Rops9g00177 | 1087 | PRINTS | Leucine-rich repeat signature | 551 | 564 | - | - | |
| Rops9g00177 | 1087 | SUPERFAMILY | RNI-like | 318 | 683 | - | - | |
| Rops9g00177 | 1087 | FunFam | Leucine-rich receptor-like protein kinase family protein | 51 | 209 | - | - | |
| Rops9g00177 | 1087 | SUPERFAMILY | RNI-like | 99 | 420 | - | - | |
| Rops9g00177 | 1087 | ProSiteProfiles | Protein kinase domain profile. | 785 | 1065 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Rops9g00177 | 1087 | ProSiteProfiles | Leucine-rich repeat profile. | 647 | 669 | IPR001611 | GO:0005515 | |
| Rops9g00177 | 1087 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 859 | 1080 | - | - | |
| Rops9g00177 | 1087 | Pfam | Leucine rich repeat N-terminal domain | 52 | 91 | IPR013210 | - | |
| Rops9g00177 | 1087 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 417 | 1057 | - | - | |
| Rops9g00177 | 1087 | SMART | LRR_typ_2 | 527 | 550 | IPR003591 | - | |
| Rops9g00177 | 1087 | SMART | LRR_typ_2 | 358 | 382 | IPR003591 | - | |
| Rops9g00177 | 1087 | SMART | LRR_typ_2 | 310 | 334 | IPR003591 | - | |
| Rops9g00177 | 1087 | SMART | LRR_typ_2 | 189 | 213 | IPR003591 | - | |
| Rops9g00177 | 1087 | SMART | LRR_typ_2 | 572 | 596 | IPR003591 | - | |
| Rops9g00177 | 1087 | SMART | LRR_typ_2 | 454 | 478 | IPR003591 | - | |
| Rops9g00177 | 1087 | SMART | LRR_typ_2 | 645 | 668 | IPR003591 | - | |
| Rops9g00177 | 1087 | SMART | LRR_typ_2 | 502 | 526 | IPR003591 | - | |
| Rops9g00177 | 1087 | SMART | LRR_typ_2 | 117 | 141 | IPR003591 | - | |
| Rops9g00177 | 1087 | FunFam | Probable LRR receptor-like serine/threonine-protein kinase At1g34110 | 210 | 299 | - | - | |
| Rops9g00177 | 1087 | FunFam | Leucine-rich receptor-like protein kinase family protein | 353 | 625 | - | - | |
| Rops9g00177 | 1087 | ProSitePatterns | Protein kinases ATP-binding region signature. | 791 | 813 | IPR017441 | GO:0005524 | |
| Rops9g00177 | 1087 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 626 | 711 | - | - | |
| Rops9g00177 | 1087 | SMART | serkin_6 | 785 | 1043 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Rops9g00177 | 1087 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 903 | 915 | IPR008271 | GO:0004672|GO:0006468 | |
| Rops9g00177 | 1087 | Pfam | Protein kinase domain | 788 | 993 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Rops9g00177 | 1087 | SUPERFAMILY | Protein kinase-like (PK-like) | 771 | 1069 | IPR011009 | - | |
| Rops9g00177 | 1087 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 770 | 858 | - | - | |
| Rops9g00177 | 1087 | Gene3D | Ribonuclease Inhibitor | 213 | 348 | IPR032675 | - | |
| Rops9g00177 | 1087 | Gene3D | Ribonuclease Inhibitor | 51 | 209 | IPR032675 | - | |
| Rops9g00177 | 1087 | Gene3D | Ribonuclease Inhibitor | 548 | 625 | IPR032675 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops9g00177 | Rops-Chr9 | 2214313 | 2217879 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops9g00177 | 48 | 1079 | Receptor kinase-like Gene Family | AT5G56040 | 65.797 | 0.0 | 1360 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-XI-1 | Rops9g00177 | Pkinase | 2.1e-36 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops9g00177 | - | - | gmx:100813139 | 1727.99 |