Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00168 ATGGAGACTAAATCAGTTGTGGATTTAATGGAGTCTTCCTCTGAGGTTCATTTTTCTGGATTTCATATGGATGGTTTTGAGCAAAGAAAAGCTGGCACAGAGCAACCGACAACTTCAGCAACTGACATGCATTCACAACCTTTTGTCATAGGTGTTGCTGGGGGAGCAGCATCTGGCAAGACAGCAGTTTGTGATATGATTATTCAACAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACCATAATTTGACTGAGGAGGAACTTCCAAGAGTACAAGATTACAACTTCGACCATCCTGAAGCTTTTGATACTGAGCTATTGCTACATGTCATGGACAAGTTGAAGCGTGGCCAAGCAGTAGATATTCCGAAGTATGACTTTAAGGGTTACAAGAATGATGTGTTTCCAGCAAGAAGGGTAAACCCTGCGGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGATCAGCGTGTTCGGGCATTGATGAATATGAAGATATTTGTTGATACAGATGCTGATATTCGTTTGGCAAGAAGGATTAAGCGTGATACTGCCGAGAATGCTCGCGATATTGGAGCAGTGCTTGATCAGTATTCTAAATTTGTGAAGCCGGCTTTTGATGACTTTATCCTTCCCACAAAGAAGTATGCTGATATCATTATACCCCGTGGAGGAGATAATCATGTGGCTATTGATTTGATTGTACAGCATATTTGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTATATGTAATTCAGTCTACTTTTCAGATAAGGGGTATGCATACCCTGATACGTGATTCTCAGACAACGAAGCATGACTTTGTATTTTATTCTGATCGTTTGATTCGTTTGGTTGTAGAACATGGCCTAGGGCATCTTCCATTTACAGAGAAGCAAGTAATCACTCCTACTGGGTCTGTATACAGTGGTGTGGATTTTTGTAAGAGGTTGTGTGGCGTCTCCATCATCAGGAGTGGGGAAAGCATGGAGAATGCTTTACGAGCATGTTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCACAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAGAAGTTGCCTAATGATATCTCAGATAGGCATGTGTTACTCTTGGATCCTATCTTAGGCACAGGTAATTCGGCCGTTCAAGCAATTTCTTTACTTTTAAGAAAGGGTGTACCAGAGTCCAACATTATATTTCTCAATCTCATATCAGCACCTCAAGGTGTGCATGTGGTCTGCAAAAGCTTTCCGAGAATCAAAATTGTGACATCTGAGATTGACATTGGTTTGAATGAAGATTTCCGTGTCATACCTGGGATGGGCGAGTTTGGAGATAGATACTTTGGAACAGATGATGATGATGACCAGGAGGTGGTGGCCCCTTCGAAGTAG 1440 0.409 METKSVVDLMESSSEVHFSGFHMDGFEQRKAGTEQPTTSATDMHSQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELPRVQDYNFDHPEAFDTELLLHVMDKLKRGQAVDIPKYDFKGYKNDVFPARRVNPADVIILEGILVFHDQRVRALMNMKIFVDTDADIRLARRIKRDTAENARDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHICTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLLRKGVPESNIIFLNLISAPQGVHVVCKSFPRIKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDDQEVVAPSK* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00168 479 Pfam Phosphoribulokinase / Uridine kinase family 49 235 IPR006083 GO:0005524|GO:0016301
Rops9g00168 479 Gene3D - 251 466 IPR029057 -
Rops9g00168 479 PRINTS Uridine kinase signature 122 137 - -
Rops9g00168 479 PRINTS Uridine kinase signature 47 64 - -
Rops9g00168 479 PRINTS Uridine kinase signature 179 189 - -
Rops9g00168 479 PRINTS Uridine kinase signature 193 204 - -
Rops9g00168 479 PRINTS Uridine kinase signature 77 88 - -
Rops9g00168 479 PRINTS Uridine kinase signature 215 228 - -
Rops9g00168 479 SUPERFAMILY PRTase-like 250 467 IPR029057 -
Rops9g00168 479 FunFam Uridine kinase 251 466 - -
Rops9g00168 479 Pfam Uracil phosphoribosyltransferase 265 466 - -
Rops9g00168 479 CDD PRTases_typeI 324 439 IPR000836 -
Rops9g00168 479 FunFam Uridine kinase 44 250 - -
Rops9g00168 479 PANTHER URIDINE KINASE 37 376 - -
Rops9g00168 479 NCBIfam uridine kinase 47 247 IPR000764 -
Rops9g00168 479 CDD UMPK 49 244 IPR000764 -
Rops9g00168 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 240 IPR027417 -
Rops9g00168 479 Gene3D - 43 250 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00168 Rops-Chr9 2154368 2161483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00168 1 469 PRT Gene Family AT4G26510 84.713 0.0 824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00168 K00876 - gmx:100798205 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00168 9 2154368 2161483 Rops9g00168 9 2154368 2161483 ECH
Rops11g02528 11 43037743 43040349 Rops9g00168 9 2154368 2161483 PCT