Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00148 ATGCAACCCAAATCTGAAAGTGCAAATCAACTGAGGTCTAATCCACATTCCTTTACACCTAGCAGTGTCTATTCTGAACCCTGGTGGCGTGGCATTGGGCACAATCCTGTCTCCCAAGCAATGTCGGGGGCAAATGCATCCAATTCATCCTCGCTTGAATGTCCTAACAGTGATTCAGATTCCAGTGGAGGCCAATCTTTGTCCAATAATGGGCTGAATGAAGATGATGATGATGATGATACTACTAAAGAATCACAACCTACGGCTCCTAATCAACCAGGAAATTATGGACAAGAACACCAGGGGATGCAACATGCTTCATCATCTGCACCTGAATGCCTTACACAGACTCCACAGAGAGAACTTGTTGGTCATTCAATTGCATGTGCTTCAAATCCTTATCAGAATCCATATTATGGGGGCATGATGGCAGCATATGCACACCAGCAGTTGGGATATGCTCCTTTTATAGGAACGCCTCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAGTTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCACGCTATGAGGAGAGCAAGGGGTAGCGGAGGACGTTTTGCAAAGAAAACTGAAGTTGAGGTTTCAAACGACTCGAGCAAGGAAAAGGATATGGGTAGTGGTCCAGTCCCATCATCACATTCAATTTGTTCATCTGGTTCGGAACCTTTACCCTCTGATTCTGCTGAGACCCGGAATTCTCCTAGTGTGGTACAAGACACAAGAGGATCTAAAGGGCATGAGAGATTTGAGGAACACAACTATGCAAGTGGTAGTGGCTCCTACAGTAATCATAATGGTTTGCAATTGCCTTCAAGTTTTTGTTTGCACTCAGGTGAAAGAGTGGAAGAAAGGGACTGTTCAGGTCAGCAAAGAGGAAGCATCTCTTCTGAGCATGCATCACAAAGGCGTCTTGCTATTCAGTAA 1050 0.4476 MQPKSESANQLRSNPHSFTPSSVYSEPWWRGIGHNPVSQAMSGANASNSSSLECPNSDSDSSGGQSLSNNGLNEDDDDDDTTKESQPTAPNQPGNYGQEHQGMQHASSSAPECLTQTPQRELVGHSIACASNPYQNPYYGGMMAAYAHQQLGYAPFIGTPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTEVEVSNDSSKEKDMGSGPVPSSHSICSSGSEPLPSDSAETRNSPSVVQDTRGSKGHERFEEHNYASGSGSYSNHNGLQLPSSFCLHSGERVEERDCSGQQRGSISSEHASQRRLAIQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00148 349 MobiDBLite consensus disorder prediction 226 242 - -
Rops9g00148 349 MobiDBLite consensus disorder prediction 252 282 - -
Rops9g00148 349 MobiDBLite consensus disorder prediction 211 349 - -
Rops9g00148 349 MobiDBLite consensus disorder prediction 297 314 - -
Rops9g00148 349 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Rops9g00148 349 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Rops9g00148 349 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Rops9g00148 349 MobiDBLite consensus disorder prediction 1 115 - -
Rops9g00148 349 MobiDBLite consensus disorder prediction 1 24 - -
Rops9g00148 349 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 9 290 IPR001289 GO:0003700|GO:0006355
Rops9g00148 349 MobiDBLite consensus disorder prediction 38 71 - -
Rops9g00148 349 Gene3D - 171 233 - -
Rops9g00148 349 MobiDBLite consensus disorder prediction 85 115 - -
Rops9g00148 349 MobiDBLite consensus disorder prediction 330 349 - -
Rops9g00148 349 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Rops9g00148 349 MobiDBLite consensus disorder prediction 211 225 - -
Rops9g00148 349 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Rops9g00148 349 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00148 Rops-Chr9 1831642 1835263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00148 13 275 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.184 4.67e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Rops9g00148 CBFB_NFYA 7.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00148 K08064 - gmx:100808378 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02492 11 42597661 42603300 Rops9g00148 9 1831642 1835263 PCT