Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00107 ATGTCCCAAACATCCGGTGGTGATGGTGCCAACATTGATCTTGCTGATAGCTTACTCCTCAAAAGCAAGTACAATAGGATATGGTTATACACAACAAGATTTGTCATCTTATTGAAGAAGCAAAAAACTGCCAATGGCACCTATGAATCTCCACCACCACCCCAATCATCATTCCCTTCAGTACCATACACCTCATTGCCTCCATCTGAGCCTTCTGTTGCAGTTAATATAGCCTCTCTTACCCAAGAGGAATCATCACTCCCTTCAGTACCATGCACCTCATTGCCTCCATCTGAGCCTTCTGTTGCAGTTAATATAGCCTCTCTTACCCAAGAGGAATCATCACTCCCTTCAGTACCATGCACCTCATTGCCTCCATCTGAGCCTTCTGTTGCAATTGATATAGGCTCTGTTGCCCAAGAGGAGGGAGAAGAACAGCGCATTAGGAATGATGTTGAGCGAAAGGAGCAGGACATTAACTCGCTTCCTGAGCTTGGTGGAGATGGTCAACGTCAACACTCACAGGAGAGCACTATTGATAATGGGGACCTTGGTATGTTGGGCACCCCTATACCAGTTCATAGAACAAGCTTCTCCAGCTTCTTATTGAATAGCTGCAAACACAATTGTTACACAATTTCAATGCTGTTGATCTCAGCTGGATTATCCTTCGCCACAGAGTTCAGGCAGGAGGGACCTAGATATGGTTGGCATGATGGTGTTGCCATAGTTTTCGCTGTTCTCCTGCTGGTTGCATTCTCTTCAATTACAGACTTTTGGCGTGAAAGACAAATGATGAAATTGGCAAAGAGAAAGGGCAAGTTGAAATTCACAGTTCAAAGAGGTCAAGAGTCTCTGGTTGCCCTTGCCATATCTGATATTGTGGTGGGTGACAAGGTGTGTCTGAATCCTGGTGATGAGGTTCCAGCAGATGGTTGGCTTGTAAGTGGTGATATCATCAGTGTGATGCATGAGGCAACAAAAAGCAATATTGATCGTGAGGCAAAACCATTTCTTAGAGCTGGTTCAAAGGTGATTGAGGGTAATGGATGGATGCGTGTAGAATCAGTTGGAAACAAAAGGAATTTGGCTAAGAAGAAGAGAGGCCCGTTGGAGAGACTAATTGAGAAGCCAATTTCTGACATTGACAAAGTTGCTCTTTTTATCTCTACACTGGTTGCATTTGTGGTGTTCATTCGCCTAATTTGTAAAAAGGATGTGGACAGTAATGGGCTGCCAGAAGTTAAGGGGAAGATCTCAGTTGGTTTGCTGATGGAAGCCCTTGAGAGAATGTTTCTGAGACCACAAGGAAGGATTTCCATTTTAACAGGTCTTGTTACTGTTGTAATACTATGTGTGCAACATGGAATGCCACTTATGGTTACAGTTTCTCTCAATTACCAGGCTAATGAGGTAGGGTCAGAACAAGATGCAGTTCTTAACGATCCATTAGCTTGTGCAACAATGGGGTTAGTAACTGTCATATGTATTGATGTGCCAGATGGGATCATATCTAAACCAGGGGAGGTTAGCAGAATCTTGATGGGCGAGACAGATATCAGCAAAGCTGAGGGATCAGAAATAGATATAGTTGTGCCAGACTTGCTTAAACAAGGAGTTGGTTTATCAGTTCATGCACCGGAACTTTCTCTTTCTCCAATGTTCAATTCACCTGTTTCAGAAAAATTCAAAGTTCTTAGGAGCAGTAAACTGAATTCTGACAAAGAAGGCAATGGAGTTTTGGTGAGAAAAGTTGGGGGCAATGAACAAATACTGCACTTGCACTGGAGTGGGGATGCTTCCACAATATTGGAAATGTGTTCCCGATACTATGGTAGTAAAGGAGAATGGCATGTCATGGAAAATCAGAAGATCAAATTTGGGCAGATGATCAAAGAGATGGAGGATAGTGGCCTAAAACCAATTGCATTTGCTCATAAACAAACAGAGGTGGAAGAACTTGAGCAAGATGAATTGTTCTTGTTGGGATTGATAGGTCTCAAATACACATTTCAAGAATCAACAAAATTAGCTTTGGAAGAACTCAAAAATACCAAAATACAGCTCATATTGGTCTCGGAGGATAACATCATGTTAGTGAAAAATATAGTTTGTGAACTGGGAATTGAAGTGTCAGTGGATGGCAATGATAGGGTGCTTGAAGGAAAAGAACTTCAAGATTTGAATGGTGAAGCTAGATTAGATAAAGTGGATAAAGCCTGTATAATGGGAAGTTTCTGTTCTGAAGACAAGCTTCTCATGGTACGGTGCTTGCAAGAAAAAGATCACGTGGTTGCATTCATTGGAAGAAGATTGAGTGATACTGCAGTTCTAAAGCAAGCTGATGTAGGGATAGTTCACAATTCTCTTAGCAGAATAGTGGATGGAGAGAGTGATATATCTATCAAATGTTTCTCTGCATTAAAACCAATTGTGAGGGCTGGCAGAAGCAAATATCACAATATTCAGAAGTTCATTCAACTTCAGCTGACATGTATCATATCGGGGTCACTCATAACCTTGATTACAACAATATTCACCGGAGAATCTCCCCTAACAGCAATCCAATTGATTTGGGTGAATATGTTAATGTGCCTTCTGGGCAGCCTAATGATGGTAATGGAGTTAAATATCAAGAAACAACTTGATGAAAAGCCATCTAAGAGGAATCAGCCAATTATAACCAAACAAATCTGGAAAAGCATAGTTATTCAGGTTTTGTGTCAGGCTTTGGTTTGCATGATGCTTGAGTTTGGGGGAGATGTTACTGACAGTGAAAAGAGAGTCAGGAAAACCATGATCTTCAACACATTCCTATTATGCCAGATCTTCAATCTGTTGGACACCATGCATTTGTGGGAAAAGGAAGTTTTAAAGATTGTTGTTCAGAGCTACTGTTTCTTGGTGGCTTTAGGTGGTTGTTTTCTTGTGCAGGTGCTGGTGATTGAGTATGCAAAAGGCCTATCAGATTGCATGAAGCTGAATGCCACTCAATGGGCTATCTGTTTCCTGGTTGGTGCTCTTTCATGGGTATATGGATTGGCCTTGAAGTATCTTCTCAGAGCCAACTGGGCTTCAGAATCAAATACTTTGCCCCTGGACTCTCCAAACACCACCCGACCAACTTGGTTCTATCTTCATGGGGCTTTTCCATTTCTGGTGCTTTTTTCATTCCCTGTAGGGCTAATGTTTAACCAAATAGGCATTGCATTTCGTTAG 3219 0.4175 MSQTSGGDGANIDLADSLLLKSKYNRIWLYTTRFVILLKKQKTANGTYESPPPPQSSFPSVPYTSLPPSEPSVAVNIASLTQEESSLPSVPCTSLPPSEPSVAVNIASLTQEESSLPSVPCTSLPPSEPSVAIDIGSVAQEEGEEQRIRNDVERKEQDINSLPELGGDGQRQHSQESTIDNGDLGMLGTPIPVHRTSFSSFLLNSCKHNCYTISMLLISAGLSFATEFRQEGPRYGWHDGVAIVFAVLLLVAFSSITDFWRERQMMKLAKRKGKLKFTVQRGQESLVALAISDIVVGDKVCLNPGDEVPADGWLVSGDIISVMHEATKSNIDREAKPFLRAGSKVIEGNGWMRVESVGNKRNLAKKKRGPLERLIEKPISDIDKVALFISTLVAFVVFIRLICKKDVDSNGLPEVKGKISVGLLMEALERMFLRPQGRISILTGLVTVVILCVQHGMPLMVTVSLNYQANEVGSEQDAVLNDPLACATMGLVTVICIDVPDGIISKPGEVSRILMGETDISKAEGSEIDIVVPDLLKQGVGLSVHAPELSLSPMFNSPVSEKFKVLRSSKLNSDKEGNGVLVRKVGGNEQILHLHWSGDASTILEMCSRYYGSKGEWHVMENQKIKFGQMIKEMEDSGLKPIAFAHKQTEVEELEQDELFLLGLIGLKYTFQESTKLALEELKNTKIQLILVSEDNIMLVKNIVCELGIEVSVDGNDRVLEGKELQDLNGEARLDKVDKACIMGSFCSEDKLLMVRCLQEKDHVVAFIGRRLSDTAVLKQADVGIVHNSLSRIVDGESDISIKCFSALKPIVRAGRSKYHNIQKFIQLQLTCIISGSLITLITTIFTGESPLTAIQLIWVNMLMCLLGSLMMVMELNIKKQLDEKPSKRNQPIITKQIWKSIVIQVLCQALVCMMLEFGGDVTDSEKRVRKTMIFNTFLLCQIFNLLDTMHLWEKEVLKIVVQSYCFLVALGGCFLVQVLVIEYAKGLSDCMKLNATQWAICFLVGALSWVYGLALKYLLRANWASESNTLPLDSPNTTRPTWFYLHGAFPFLVLFSFPVGLMFNQIGIAFR* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00107 1072 PANTHER CATION TRANSPORTING ATPASE 193 1018 - -
Rops9g00107 1072 Gene3D - 353 502 - -
Rops9g00107 1072 SUPERFAMILY Calcium ATPase, transmembrane domain M 211 1022 IPR023298 -
Rops9g00107 1072 Gene3D - 516 663 IPR023299 GO:0000166
Rops9g00107 1072 SUPERFAMILY Calcium ATPase, transduction domain A 283 360 IPR008250 -
Rops9g00107 1072 Pfam Cation transporting ATPase, C-terminus 850 1019 IPR006068 -
Rops9g00107 1072 Gene3D - 251 350 - -
Rops9g00107 1072 MobiDBLite consensus disorder prediction 167 182 - -
Rops9g00107 1072 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 562 667 IPR023299 GO:0000166
Rops9g00107 1072 MobiDBLite consensus disorder prediction 140 161 - -
Rops9g00107 1072 MobiDBLite consensus disorder prediction 139 184 - -
Rops9g00107 1072 SUPERFAMILY HAD-like 660 869 IPR036412 -
Rops9g00107 1072 Gene3D - 808 1023 - -
Rops9g00107 1072 Coils Coil 138 158 - -
Rops9g00107 1072 MobiDBLite consensus disorder prediction 44 65 - -
Rops9g00107 1072 Pfam E1-E2 ATPase 279 465 - -
Rops9g00107 1072 Gene3D - 664 807 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00107 Rops-Chr9 1285973 1289485 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00107 212 1019 Primary Pumps ATPases AT3G63380 33.566 6.27e-124 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00107 K01537 - gmx:102661547 1018.07