Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00105 ATGTCCCAAGCAAGCATGTCCTCAGCTGGTGGTGATGGTGCCAACATTGAACTTGGTGCTAGCTTGCTCCTCGGTAGCAAGTACACCAGGATATGGCGGAGAAGCTTGTATATAGGATTCATCATCTCTTTAAAGAAGCAAACAACTGCCAATGGCAGCTTTGAATCTCCACCATCACCACTCTCTTCAGTACAATACACTTCACTGCCTCCATCTGAGCCTCCTACTAGAACCTCCTCAGCCAAATCTTCTGTTGCAATTGATATAGGCTCTCATGCTGAATATGAGGGAGAAGAACAGCGCATTAGGAATCATATTGAGCGAATTGTGAAGGAGCAGGACTTGAATTCGCTTCTTGAGCTTGGTGGGGTTGACCGCATTTGTGCTGCTCTCCATGGTCAACGTCGACACTCAGAGGAGAGCACTAATGATAATGGGAACATTGGTATGTTGGGCACCCCTATACCAGTTCATAGAACAAGTTTCTCCAGCTTTTTATTGAATAGCTGCAAACACAATTGTTACACAATTTCAATGCTATTGATCTCAGCTGGATTATCCTTCGCCACAGAGTTCAAGCAGGAGGGACCTAGGTATGGTTGGCATGATGGTGTTGCCATAGTTTTTGCTGTTCTCCTGCTGGTTGCATTCCCTTCAATAAGAAACTTTTGGCGTGAAAGACAAATGATGAAATTGGTAAAGAGAAAGGGCAAGTCGGAATTCTTAGTTCAAAGAGGTCAAGAGTCCATTGCCCTTGCCATATCTGATATTATGGTGGGTGACATGGTGTGTCTGAAGCCGGATGATGAGGTTCCAGCAGATGGTTTGCTTGTAAGTGGTGATATCATCAGTGTGATGCATGAGGCAACAAAAAGCAAGATTGATCGTGAGGCAAAACCATTTCTTAGAGCTGGTTCAAAGGTGATTGAGGGCAGCGGAAAGATGCTTGTAGCATCAGTTGGAAACCAAACGAATTTGGCTGAGATGCAGAGCTCAATGAGTTATAATCCTGAAAAGAGAGGCTTGTTGGAGAGCCTAATTGAAAAGCCAATTTCTGACATTGACAAAGTTGCTCTTTTTATCTCTACACTGGTTGCATTTGTCGTGTTCATTCGCCTAATTTGTAAAAAGGATGTGGACAGTAATGGGCTGCCAGAAATTAAGGGGAAGATCTCAGTTGGTTTGCTGATGGAAGCCCTTGAGAGAATGTTTTTGAGACCACAAGGAAGGATTTCCATTTTAACAGGTCTTGTTACTGTTGTAATACTATGTGTGCAACATGGAGTACCACTGATGGTTGCAATTTCTCTCAATCACCAGATTGATGAAGTAGAGTCAGAAAAAGATGCAGTTTTTAATGATTTACCAGCTTGTGCCACAATGGGGTTGGTAACTGTCATATGCATTGATGTATCAGGTGAGCTCATATCTAAACCAATGGAGGTTAGCAGAATTTGGATGGGGGAGACAGATATCAACGAGATTGAGGGATCAGAAACAGATCTAGTAGGACTTGACATGCTCAAACAAGGAGTTAGTTTATCAGATCTTGCACCTGAAATTTCTTTTTCTCCTACGTCCAATTCACTTGTTTCTTGGGCAGAAACATGGGAAATAAACATTAAATCTTGCACAGAGAAATTTGACATTCTTAAGCATAGTAAACTGAATTCTGACAGTGAAGGCAGCAGAGTTTTGGTGAGAAAAGTTGGGGGCAATGAACAAGTTCTGCACTTGCACTGGAGTGGGGCTGCATCCACAATATTGGAAATGTGTTCACAATACTATGATAGTAAAGGAGAATTTCATGCCATGGAAAATAAAAGAATCGAATTTGGGCAGGTGATTCAAGAGATGGAGGATAGTGGCCTGAAACCAATTGCATTTGCTCATAAAGAAACAGAGGTGGAAGAACTTGAGCAAGATGAATTATTCTTGTTGGGATTGATAGGTCTCAAATACACATGTCAAGAATCCACAAAAATAGCTTTGGAAAATCTCAAAAATACCAAAATACAACTCAGATTGGTCTCGGAGGATGACATCATGTTAGTGAAAAATATAGCTTGTGAACTGGGAATTGAAGTGTCAGTGGATGGCAATGATAGGGTGCTTGAAGGAAAAGAACTTCAAGATTTGAATGGTGAAGCTAGATTAAATAAAGTGGATGGAGCAATTGTAATGGGAAGTTTCTGTCCTGAAGACAAGCTTCTCATGGTACGGTGCTTGCAAGATAAAGATCACGTGGTTGCATTCATTGGAAGAAGATTGAGTGATACTGCCGTTCTAAAACAAGCTGATGTAGGGATAGTTCACAATTCCCTTAGCAGAATAGTGGATGGAGAGAGTGATATATCTATCAAATGTTTCTCTGCTTTAAAACCAATTGTGAGGGCTGGCAGAAGCAAATATCACAATATTCAGAAGTTCATTCAACTTCAGCTGACAAGTATCATATCAGGGTCACTCATAACCTTGATTACAACAATATTCACCGGAGAATCTCCCCTAACAGCAATCCAATTGATTTGGGTGAATATGTTACTGTGCCTTCTGGGAAGCCTAATGATGGTAATGGAGTTAAATATCAAGAAACAACTTGACAAAAAGCCATCTAAGAGGAATCAGCCAATTATAACCAAACAAATCTGGAAAAGCATAGTTATTCAGGTTTTGTGTCAGGCTTTGGTTTGCATGATGCTTGAGTTTGGGGGAGATGTTCTTGTGGTGAAAAGAGAGTCGGAAAACCATGATCTTCAACACATTCCTATTATGCGGATCTTCAATCTGTTGGACACCATGCATTTGTGGGAAAAGGAAGTTTTAAAGATTGTTGTTCAGAGCTACTGTTTCTTGGTGGCTTTAGGTGGTTGTTTTCTTGTGCAGGTGCTGGTGATTGAGTATGCAAAAGGCCTATCAGATTGCATGAAGCTGAATGCCTCTCAATGGGCTATCTGTTTCCTGGTTGGTGCCCTTTCATGGGTATATGGATTGGCCTTGAAGTATCTTCTCAGAGCCAACTGTGATTCAGAATCAAATACTTTGCCCCTGGACTCTCCAAACTCCACCCGACCAACTTGGTTCTATCTTCATGGGGCTTTTCCATTTCTGGTGCTTTTTTCATTCCCTGTAGGACTAATGTTTAACCAAATAGGCATTGCATTTCGTTAG 3171 0.4134 MSQASMSSAGGDGANIELGASLLLGSKYTRIWRRSLYIGFIISLKKQTTANGSFESPPSPLSSVQYTSLPPSEPPTRTSSAKSSVAIDIGSHAEYEGEEQRIRNHIERIVKEQDLNSLLELGGVDRICAALHGQRRHSEESTNDNGNIGMLGTPIPVHRTSFSSFLLNSCKHNCYTISMLLISAGLSFATEFKQEGPRYGWHDGVAIVFAVLLLVAFPSIRNFWRERQMMKLVKRKGKSEFLVQRGQESIALAISDIMVGDMVCLKPDDEVPADGLLVSGDIISVMHEATKSKIDREAKPFLRAGSKVIEGSGKMLVASVGNQTNLAEMQSSMSYNPEKRGLLESLIEKPISDIDKVALFISTLVAFVVFIRLICKKDVDSNGLPEIKGKISVGLLMEALERMFLRPQGRISILTGLVTVVILCVQHGVPLMVAISLNHQIDEVESEKDAVFNDLPACATMGLVTVICIDVSGELISKPMEVSRIWMGETDINEIEGSETDLVGLDMLKQGVSLSDLAPEISFSPTSNSLVSWAETWEINIKSCTEKFDILKHSKLNSDSEGSRVLVRKVGGNEQVLHLHWSGAASTILEMCSQYYDSKGEFHAMENKRIEFGQVIQEMEDSGLKPIAFAHKETEVEELEQDELFLLGLIGLKYTCQESTKIALENLKNTKIQLRLVSEDDIMLVKNIACELGIEVSVDGNDRVLEGKELQDLNGEARLNKVDGAIVMGSFCPEDKLLMVRCLQDKDHVVAFIGRRLSDTAVLKQADVGIVHNSLSRIVDGESDISIKCFSALKPIVRAGRSKYHNIQKFIQLQLTSIISGSLITLITTIFTGESPLTAIQLIWVNMLLCLLGSLMMVMELNIKKQLDKKPSKRNQPIITKQIWKSIVIQVLCQALVCMMLEFGGDVLVVKRESENHDLQHIPIMRIFNLLDTMHLWEKEVLKIVVQSYCFLVALGGCFLVQVLVIEYAKGLSDCMKLNASQWAICFLVGALSWVYGLALKYLLRANCDSESNTLPLDSPNSTRPTWFYLHGAFPFLVLFSFPVGLMFNQIGIAFR* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00105 1056 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 480 652 IPR023299 GO:0000166
Rops9g00105 1056 SUPERFAMILY Calcium ATPase, transduction domain A 241 331 IPR008250 -
Rops9g00105 1056 Gene3D - 480 648 IPR023299 GO:0000166
Rops9g00105 1056 Gene3D - 275 479 - -
Rops9g00105 1056 Gene3D - 793 920 - -
Rops9g00105 1056 PANTHER CATION TRANSPORTING ATPASE 104 1002 - -
Rops9g00105 1056 SUPERFAMILY Calcium ATPase, transmembrane domain M 175 1006 IPR023298 -
Rops9g00105 1056 SUPERFAMILY HAD-like 466 854 IPR036412 -
Rops9g00105 1056 Pfam Cation transporting ATPase, C-terminus 835 1003 IPR006068 -
Rops9g00105 1056 Gene3D - 649 792 IPR023214 -
Rops9g00105 1056 Pfam E1-E2 ATPase 240 372 - -
Rops9g00105 1056 Gene3D - 921 1009 - -
Rops9g00105 1056 MobiDBLite consensus disorder prediction 51 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00105 Rops-Chr9 1263010 1266525 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00105 75 1003 Primary Pumps ATPases AT3G63380 31.633 7.08e-132 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00105 K01537 - gmx:102661547 1092.03