Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00101 ATGTTCCCTCCGCGACAGCAGTCCCGGGTTGGAGGACTGCAAACATCTCTGTCTCTAGTTTCTTCTGACCCTCACCTTTCTCCGGAGGAACCGAGATGTGAATCTCCTACTGAAAGTGCTAGTTCTCGGGAAACCTGGCCTGCTGCTGATGCAATTGCTGCAAAGAAAATGGAGAATGGAAAAGCTGAGATTGATTGCCCTGATCAGTCGGTTATTCGTCGTGTTTCTAGTGCAGACAAAATTGCTCTTCATGACATTGCAAGAGAAAGAGTTGATATAGTATGTGAAAAAATGCATCGACTACCTGAAGAATTTCTAGAAGAGCTGAAAAATGGACTTCGAGTCATCCTTGAGGGAGGGAATGGCTCACAGCATAGAGAGGAATTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGAGCTGATTTAACAGCCAAGACATTGATAAGAGCACATCGTGTGCAGCTTGAAATCCTTGTTGCCATAAATACTGGAATTCAGGGATTTTTACATCCCAGCATCAGTCTATCGCAGACTGCGCTGATTGAGATATTTGTGTATAAGAGATGCAGAAACATAGCTTGCCAAAACCAGCTTCCGGCTGATGATTGTACCTGTGAAACATGTACCAACAGCAATGGCTTCTGCAATCTTTGCATGTGTGTTATCTGTAGCAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGATGTGATTTATGTTCTCATTGGACTCATACAGATTGTGCCATACGCGAGCAGCTTATTTGCATGGGCCCTTCTGTAAAGAGTGGAGCAGGGCCTGGTGAAATGGTTTTTAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGTTGGGTTAAAGATGTCTTCCAGCATTGTGCACCGTCATGGGAGGGGGAGGCCTTAATGAGGGAACTTGATTTTGTTAGTAGAATCTTTCATGGTAGTAAAGACCCACGAGGGAGGAAACTCTTTTGGAAGTGCGATGATCTCCATGAAAAACTGAAAAGTGGAAAAGTGGAATCTAAGGCTGCTTGCAGGGCAATATTGATGGTTTTCCAAGAGCTTGAGGTGGACTCTCCAAAGAGCCTGGAAAATGCAGAAAGTGGAAGGCTGATTGCTCCACTGGATGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATAAGAAAGATGGAAATAGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGGTTGGCTCTTGAGGCTTGTGATCGTGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTCAAGATGGATAGGCAAAAAAAGAAGTTGCAGATTGAAGAACTGGAGAGAATTGTGAAGCTTAAAAATGCAGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCCAAACGGGAGGCTGAGAGGCTCCAGAGGATTGCTCTAGCCAAGTCTGATAAATCAGAGGAAGAATATACTAGCAACTATTTGAAACAAAGATTAAGTGAGGCTGAGGCTGAGAAGCAATATCTGTATGAGAAGATCAAATTGCAGGAGAGTTCTCGCTTATCACAGAGCAGCAGTGGTGGTGACCCCTCTTCAATGCTGATGTATTCCAAAATCCATGATCTTCTCTATAGTGTTCCTCCCAAGGCAGACAGCCAATCTAATGATTGCCACCCCTTCCGAACAAACCCATGA 1686 0.4419 MFPPRQQSRVGGLQTSLSLVSSDPHLSPEEPRCESPTESASSRETWPAADAIAAKKMENGKAEIDCPDQSVIRRVSSADKIALHDIARERVDIVCEKMHRLPEEFLEELKNGLRVILEGGNGSQHREEFFILQKLVQSRADLTAKTLIRAHRVQLEILVAINTGIQGFLHPSISLSQTALIEIFVYKRCRNIACQNQLPADDCTCETCTNSNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSVKSGAGPGEMVFRCQACNRTSELLGWVKDVFQHCAPSWEGEALMRELDFVSRIFHGSKDPRGRKLFWKCDDLHEKLKSGKVESKAACRAILMVFQELEVDSPKSLENAESGRLIAPLDACNRIAEVVQEAIRKMEIVADEKMRMFKKARLALEACDRELADKAREAGELKMDRQKKKLQIEELERIVKLKNAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRLSQSSSGGDPSSMLMYSKIHDLLYSVPPKADSQSNDCHPFRTNP* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00101 561 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 154 169 IPR004082 -
Rops9g00101 561 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 139 154 IPR004082 -
Rops9g00101 561 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 481 503 IPR004082 -
Rops9g00101 561 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 180 201 IPR004082 -
Rops9g00101 561 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 442 462 IPR004082 -
Rops9g00101 561 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 97 119 IPR004082 -
Rops9g00101 561 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 299 318 IPR004082 -
Rops9g00101 561 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 226 246 IPR004082 -
Rops9g00101 561 Pfam PHD - plant homeodomain finger protein 189 312 IPR032881 -
Rops9g00101 561 MobiDBLite consensus disorder prediction 1 45 - -
Rops9g00101 561 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 35 542 IPR004082 -
Rops9g00101 561 MobiDBLite consensus disorder prediction 1 23 - -
Rops9g00101 561 PIRSF UCP025218 1 547 - -
Rops9g00101 561 Pfam Coiled-coil region of Oberon 407 540 IPR032535 -
Rops9g00101 561 SMART PHD_3 219 279 IPR001965 -
Rops9g00101 561 Coils Coil 427 482 - -
Rops9g00101 561 CDD PHD_OBE1_like 219 278 IPR047578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00101 Rops-Chr9 1229436 1232531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00101 189 291 PHD Gene Family AT5G57380 31.731 5.65e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00101 - - gmx:100795450 1037.71