Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00100 ATGTCTCTGAATCGAAGGCTTTCTGGTTCAAATGGTAAATCTTCACCAATTATGAAGTCTTGGAAGGTAAATGAGCCCTTGCGTGGGTCTAATTCTCATAGGACAAGCTGGAGGAAGCCCTTGCTCCTTTGGATTTTTGGCTTTGTTGCTATAGGGAGTGTTTGGTTTATCTTGAGTTTCAATAGTAAGCTTTTGATGAAAGAAGCAGCTTGTGAAGAGAGTGCACAAACCTTGCTACAACGTTACAATGTTAGTAGGAAGCAGCTTCATTCTTTGGCTTCCTTATTCTCTGGATCAGATCAGATTTTGTCCAACTGTATTGATGAAAGAAGACTTCAAATGCTGTTAAGCAGTGGCATGGTAAGCACTCCACAATTAATGTGTTCAGAGAATCAGGAGTTACAAAAGGAGACTCTAGAACCTATAGAACAATGCCCAATCCTTGATGATTTTGTCCAGAATATTTTGCAGTCATGGAAACTGAGGGTCTGTCCAATTCAGGATCAAGTGAGTTCGTCTAATTTTATTAAAGGGTGCTGCTTGGTCCTTATTGGAATTATAATGTCCTTCAAGTTGTCTGGCTTCTGTTTACTATGGAGGAATCAAAAGCAGAAGCTAGTTAAGGAGCATCCAACTGTTCAACAAAAGTGGCTGCAACATTTTGTACAGGGTCCTTCAAAGGGTGCTGGGAGGTGGAGGAAAAATTTGCTAGTTATATTTGTGTCACTTGGAATAGTTGGGTCTGTTTGGTTATTCTGGCACCTAAATATGGACATTAAGCGGAGAAGAGAGGACATGCTTGCCAATATGTGTGATGAGCGAGCCCGTATGCTTCAAGATCAATTTAACGTGAGCATGAACCATGTTCATGCACTGGCGATTCTTGTGTCTACCTTTCACCATGATAAACATCCTTCTGCAATTAACCAGAAAATTTTTGGAGAATATACAGAGAGTACAGCATTTGAGAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAGAGTTCTCCACTCTGATAGGATGCATTTTGAGGAGCGGCATGGGTGGACAATTAAGAAAATGGAAACTGAGAATGAGGCATTAGTCCAAGATTGTATTCCAGAAAATCTGGATCCAGCACCCATTCAAGATGAATATGCACCAGTGATATTCGCTCAAGAAACAGTTTCCCATATTGTATCTGTTGACATGATGTCAGGGAAGGAGGACCGTGAGAACATCTTGCGAGCAAGGGCATCTGGAAAGGGGGTTCTGACATCCCCTTTTAAACTACTAAAGTCCAATCACCTGGGTGTTGTACTTACATTTGCTGTCTATAACACTAATCTTCCTCCAGATGCAACACCGGAGCAGCGTATTGAAGCTACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCACTGGTGGACAAGCTTCTCCACCAACTTGCCAGCAAGCAAACCATCGTTGTAAATGTTTATGACACAACTAATGCATCTGCACCTATCACGATGTATGGTACTGAAGTTGCTGATACTGGCCTACTACACATAAGCAGTCTAGATTTTGGGGATCCACTACGAAAACATGAGATGCATTGCAGGTTCAAGCAGAGGCCTCCATTACCTTGGACGGCAATCAATGCATCTGTGGGGGTACTTGTTATTACTTTGCTTCTGGGTCATATATTTTGTGCAGCAATAAATCGAATAGCAAAAGTGGAAGATGACTATCGTCAAATGAGAGAGCTGAAAGGTCGTGCTGAAGCTGCAGACGTGGCAAAATCTCAGTTTCTTGCGACAGTTTCACATGAGATCAGAACTCCAATGAATGGTGTATTAGGTATGCTGCAAATGTTGATGGACACTGACCTTGATGAAAACCAGATGGATTGTGCCCAAACTGCCCACGAGAGTGGTAAAGATCTTATATCAGTCATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCAGGCAAGCTTGAACTTGAAGCTATAGCTTTTGATCCGCATGCTATTCTAGATAAAGTTTTATCAAGTTTCTCTGAAAAATCTAATGAAAAAGGAATTGAGTTGGCTGTTTATGCATCCAATCAAGTACCCGAAGTTGTCATTGGTGATCCTAAACGGTTCCGGCAAATAATAACCAATCTTGTTGGCAATTCACTTAAGTTCACTCATGATAAAGGACATGTTTTTGTCTCGATTCATCTGGCAAATGAAGCAAAGAACCCACTTCATATTATGGATGCAGTGCTGAGAGAAGGCTTAAATTTGGATCAGGACATGCCAGACAGAACATATAATACATTAAGTGGGTTTCCTGTCAGCAACAGATGGAAAAGCTGGGCAAATTTTAAGAAGTTAAATAGCATAAATTTGATGGATGAGCGTGAAATCATTCAACTACTAGTAACCGTTGAGGACACAGGTATAGGAATTCCTACAGATGCACAAAGCCGCATATTCACACCTTTTATGCAGGCTGATAGTTCCACATCCCGGATGTATGGTGGAACTGGAATAGGACTGAGCATTAGTAAATGTTTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGGAATTGGAAGTACTTTTTCATTTACCGGAAATTTCAGAAAAGGAGAAACCACATCTTTGGATGCAAAGTGGCAGAATTACAGTCTTTTTGTCTCTGAGTTCCAAGGATTGAGAGCATTAGTAATAGATAGAAGAAAAATCCGAGCTGAGGTCACAAGATATCATCTGCAGAGGTTGGGGATGTCTGTGGATGTAACTTCCAGTCTTAAATCTGCATGCTCTTGTCTATCTGATACTTGCAACATGAGTATGTCGACGAAGTTGGCCATGATTCTTATAGACAAGGATTCTTGGGATAAGGAAAGTAGTATCTTATACACCATCAAGAAACACAGACAGAATGGCATCAAAGGGGACCCAATAAACTTTCCAAAAATTTTTCTCCTTGCCACACACCTTAGCCCCAGTGAACATGATGATCTCAAGTCAGTTGGCATCATTGATGATATACTATTGAAACATGATGATCTTAAGTCAGTTGGCATCATTGATGATATACCATTGAACCCTCTTTGGCTTAGTGCTTTGATTCACTGCTACAGAGAATCCCTTGGAACTGAAAAAAAGCAAATAAATAGGAAGAAAGTGTCCAAACTTGGAAATTTATTAGTAAACAAAAAAATTTTGGTGGTTGATGATAATGCAGTGAACAGAAAAGTTGCAGAAAGTGTTCTGCAGAAATATGGGGCAATAGTTACCTGTGTGGAGAGTGGCAAGGATGCTCTAAAGATTCTTAAGCCACCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGACGGATTTGAAGTGACAAGGAAAATCCGCTGTCTCGAGAGTGAGGTAAATGAGAAAATTGCATGTGGCCAAGCATCAGCAGAGATGTTTGGTAACATCTCTTATTGGCACATGCCAATACTAGCAATGACAGCTGATGTAACTCAAGCTTCAAATGAAGAATGCAGAAAGTGTGGGATGGATGATTACGTTTCAAAGCCATTTGAAGAAGACCAGCTCTATATGGCAGTGGCACGTTTCTTCAATTGTGGTTCATAG 3624 0.4073 MSLNRRLSGSNGKSSPIMKSWKVNEPLRGSNSHRTSWRKPLLLWIFGFVAIGSVWFILSFNSKLLMKEAACEESAQTLLQRYNVSRKQLHSLASLFSGSDQILSNCIDERRLQMLLSSGMVSTPQLMCSENQELQKETLEPIEQCPILDDFVQNILQSWKLRVCPIQDQVSSSNFIKGCCLVLIGIIMSFKLSGFCLLWRNQKQKLVKEHPTVQQKWLQHFVQGPSKGAGRWRKNLLVIFVSLGIVGSVWLFWHLNMDIKRRREDMLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHDKHPSAINQKIFGEYTESTAFERPLTSGVAYALRVLHSDRMHFEERHGWTIKKMETENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSVDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPPDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTEVADTGLLHISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVLVITLLLGHIFCAAINRIAKVEDDYRQMRELKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDENQMDCAQTAHESGKDLISVINEVLDQAKIEAGKLELEAIAFDPHAILDKVLSSFSEKSNEKGIELAVYASNQVPEVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSIHLANEAKNPLHIMDAVLREGLNLDQDMPDRTYNTLSGFPVSNRWKSWANFKKLNSINLMDEREIIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRMYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGNFRKGETTSLDAKWQNYSLFVSEFQGLRALVIDRRKIRAEVTRYHLQRLGMSVDVTSSLKSACSCLSDTCNMSMSTKLAMILIDKDSWDKESSILYTIKKHRQNGIKGDPINFPKIFLLATHLSPSEHDDLKSVGIIDDILLKHDDLKSVGIIDDIPLNPLWLSALIHCYRESLGTEKKQINRKKVSKLGNLLVNKKILVVDDNAVNRKVAESVLQKYGAIVTCVESGKDALKILKPPHNFDACFMDLQMPEMDGFEVTRKIRCLESEVNEKIACGQASAEMFGNISYWHMPILAMTADVTQASNEECRKCGMDDYVSKPFEEDQLYMAVARFFNCGS* 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00100 1207 ProSiteProfiles Response regulatory domain profile. 1066 1203 IPR001789 GO:0000160
Rops9g00100 1207 SMART CHASE_2 304 503 IPR006189 -
Rops9g00100 1207 Gene3D CHASE domain 308 535 IPR042240 -
Rops9g00100 1207 FunFam Histidine kinase 4 561 652 - -
Rops9g00100 1207 Pfam His Kinase A (phospho-acceptor) domain 589 654 IPR003661 GO:0000155|GO:0007165
Rops9g00100 1207 Gene3D - 561 652 - -
Rops9g00100 1207 PRINTS Bacterial sensor protein C-terminal signature 816 826 IPR004358 GO:0016310|GO:0016772
Rops9g00100 1207 PRINTS Bacterial sensor protein C-terminal signature 857 870 IPR004358 GO:0016310|GO:0016772
Rops9g00100 1207 PRINTS Bacterial sensor protein C-terminal signature 798 812 IPR004358 GO:0016310|GO:0016772
Rops9g00100 1207 PRINTS Bacterial sensor protein C-terminal signature 833 851 IPR004358 GO:0016310|GO:0016772
Rops9g00100 1207 Coils Coil 566 586 - -
Rops9g00100 1207 ProSiteProfiles CHASE domain profile. 304 528 IPR006189 -
Rops9g00100 1207 SMART HKATPase_4 701 873 IPR003594 -
Rops9g00100 1207 Gene3D - 653 874 IPR036890 -
Rops9g00100 1207 SMART HisKA_10 589 654 IPR003661 GO:0000155|GO:0007165
Rops9g00100 1207 Pfam Response regulator receiver domain 1067 1199 IPR001789 GO:0000160
Rops9g00100 1207 CDD HATPase_EvgS-ArcB-TorS-like 706 868 - -
Rops9g00100 1207 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 643 868 IPR036890 -
Rops9g00100 1207 FunFam Histidine kinase 4 308 535 - -
Rops9g00100 1207 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 701 868 IPR003594 -
Rops9g00100 1207 SUPERFAMILY CheY-like 1064 1203 IPR011006 -
Rops9g00100 1207 SMART REC_2 1065 1199 IPR001789 GO:0000160
Rops9g00100 1207 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 575 655 IPR036097 GO:0000155|GO:0007165
Rops9g00100 1207 PANTHER TWO-COMPONENT HISTIDINE KINASE 239 1196 - -
Rops9g00100 1207 CDD REC_hyHK_CKI1_RcsC-like 1067 1199 - -
Rops9g00100 1207 Gene3D - 1061 1205 - -
Rops9g00100 1207 Gene3D - 255 307 - -
Rops9g00100 1207 Gene3D - 66 99 - -
Rops9g00100 1207 CDD HisKA 589 650 IPR003661 GO:0000155|GO:0007165
Rops9g00100 1207 Pfam CHASE domain 307 501 IPR006189 -
Rops9g00100 1207 ProSiteProfiles Histidine kinase domain profile. 596 873 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00100 Rops-Chr9 1205678 1216422 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00100 45 1203 Miscellaneous Gene Families AT5G35750 59.677 0.0 1360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops9g00100 CHASE 2.2e-34 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00100 K14489 - gmx:100805107 1992.24