Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00096 ATGGTTTCTTCAGACGAAAGTGTTGATCACAATGATTCTTCTGATAAAGTACAACAGGGAATGAGTCCTCATAGCGATAGTACATTGTCACAAGGGATTCATGATACTAAAATTCATTTGTCCAAACCAGAGGGAGCAACAAATATTCCTTCTATTGTAGCTAAAAACGAAGTGAAGGAAGCTACTGCCTTGCAATCAGACCAAGAAGGAAGCACACACTCTTTACCACCTGAGAAACATTTGCATAGCCCAGATACTCTTTCGCATGAATTGCCTCCATTGCAATCTGGTCAGGACAGTCCTTCTATAATACGTGAAAGGGTATCAAGAGATGGCTATAACTGGCGAAAATATGGCCAGAAACATGTTAAGGGGAATGAATTTATAAGGAGCTATTACAGGTGTACACATCCAAACTGCCAGGCAAAGAAGCAATTGCAGCAGTCAAATAATGGCCATATTACAGATTCCATTTGCATCGGTCAGCATAATCATCCTAGACCTCAATCGAACACCACACTACCAGTGGATAGTGTTCTTCCAGTTGTTGGACAAGGAACACACAAACCCTCTTTAGCCAATGTTGAAGATAAATTGTCCGTTGAGCATGGATGTATGCCTCAACAGATCAAGCCTTCACATTCCCCTCCAACTTCAAAAGTTTCCCCAGCTGATGAGTTGAAAGCTGCACATTTACAACTGACAGTAAAGGATGAGGTCCATAACAATGAGTATCCTGAGTCAAAGCGGCAGAAGAAAGACAATAACACTGATGTCACTGGAGTTGACATGTCAACTTGTGAATCTCGTGTTGTTGTTCAGACTTTAAGTGAGGTTGACTTGGTAAATGATGGGTTTCGCTGGCGCAAATATGGGCAGAAACAAGTTAAAGGGAATACAAATCCAAGAAGTTATTATCGATGCTCAAATCCTGGATGCCCTGTCAAAAAACACGTGGAGAGGGCCTCTCATGATTCGAAGATTGTAATAACTACTTATGAGGGACAACATGATCATGAAAATCCACCTGGAAGGAGTGTCACTCATAATGCAGCTACAAATACTCACACAATGGCCACCAATGGCAAGGCAGGAACCAAATCTGGAGGTACTGTTCGTGTTGCTACTGGGGACCGCAGCTGCCTGGACTCAAAAAGCAGATTAAATGAGCAACTAAATGAGGAGTCAAATACTAAATCAAAGGCTGGTGATATGGTTGAGTTTCGTGTGATCAACCCTTGTAACGAGGGCCCTGAAAGTAAATTAAGTGAGCAAGAACAACAAAATGATGACTCAGGTGCCAAAGATGACTCTGTCAGCAATGACATCATATGCCATTCAAGTTCTGAAGTTCCATGTAGATCAAACTAA 1371 0.4179 MVSSDESVDHNDSSDKVQQGMSPHSDSTLSQGIHDTKIHLSKPEGATNIPSIVAKNEVKEATALQSDQEGSTHSLPPEKHLHSPDTLSHELPPLQSGQDSPSIIRERVSRDGYNWRKYGQKHVKGNEFIRSYYRCTHPNCQAKKQLQQSNNGHITDSICIGQHNHPRPQSNTTLPVDSVLPVVGQGTHKPSLANVEDKLSVEHGCMPQQIKPSHSPPTSKVSPADELKAAHLQLTVKDEVHNNEYPESKRQKKDNNTDVTGVDMSTCESRVVVQTLSEVDLVNDGFRWRKYGQKQVKGNTNPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHENPPGRSVTHNAATNTHTMATNGKAGTKSGGTVRVATGDRSCLDSKSRLNEQLNEESNTKSKAGDMVEFRVINPCNEGPESKLSEQEQQNDDSGAKDDSVSNDIICHSSSEVPCRSN* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00096 456 Gene3D WRKY domain 269 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g00096 456 MobiDBLite consensus disorder prediction 441 456 - -
Rops9g00096 456 SUPERFAMILY WRKY DNA-binding domain 105 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g00096 456 ProSiteProfiles WRKY domain profile. 277 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g00096 456 MobiDBLite consensus disorder prediction 423 437 - -
Rops9g00096 456 MobiDBLite consensus disorder prediction 89 103 - -
Rops9g00096 456 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 68 363 IPR044810 GO:0003700
Rops9g00096 456 ProSiteProfiles WRKY domain profile. 104 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g00096 456 SMART WRKY_cls 282 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g00096 456 SMART WRKY_cls 109 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g00096 456 MobiDBLite consensus disorder prediction 1 105 - -
Rops9g00096 456 MobiDBLite consensus disorder prediction 234 261 - -
Rops9g00096 456 MobiDBLite consensus disorder prediction 14 35 - -
Rops9g00096 456 Pfam WRKY DNA -binding domain 283 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g00096 456 Pfam WRKY DNA -binding domain 111 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g00096 456 Gene3D WRKY domain 102 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g00096 456 MobiDBLite consensus disorder prediction 387 456 - -
Rops9g00096 456 MobiDBLite consensus disorder prediction 234 257 - -
Rops9g00096 456 FunFam WRKY transcription factor 57 268 342 - -
Rops9g00096 456 FunFam WRKY transcription factor 98 169 - -
Rops9g00096 456 SUPERFAMILY WRKY DNA-binding domain 274 342 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00096 Rops-Chr9 1177332 1180773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00096 94 402 WRKY Transcription Factor Family AT2G04880 44.838 1.45e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops9g00096 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00096 K18834 - gmx:100781219 664.07