Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00091 ATGCAATCAGACAATGGCAAATTATTTATTGGTGGAATATCATGGGACACAAATGAAGAGAGACTCAGGGAGTATTTCAGTGCGTTTGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCACGTGGATTTGGTTTTGTTGTTTTTGCAGACCCAGCTGTTGCAGAATTAGTCATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCTAGGGATGATCAGAACATACTGAATAGGAACAGTGGTAGCATCCATGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGTGATTTCAAGAAATACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACACAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGACAAGGTCTTACTTAAGACATTTCATGAATTGAATGGCAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGCTATCGCCAGGACCTAGCCGTTCTCCACTTGGTGGATACAACTATGGTCTGAGTAGGGTAAATAGTTTCTTAAATGGCTTCACTCAGGGGTATACTCCAAGTACTGTTGGAGGCTATGGACTTCGGGTGGATGGTAGATTCAGTCCGGTTGCCGGTGGTCGAAGCGGATTTGCTCCATTTGGATCTGGCTATGGTATGAGTATGAATTTTGAGCCTGGTTTGAGTGCTGGATTTGGGGGCAATGCAAATTTCAATAGCAATCTTAGCTATGGTCGGGGATTAAGTCCTTACTTCATTGGCAACTCCAATAGGTTTGGAAGTCCTGTTGGATATGACAGTGGTAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGGAATGGTGGCCTCAGTTATGGAACAAGTTCTGCAAATTCCAGTGCATACATTGGATCAGGGAGTGGAAGTGTTGGAGGGAACACATTTGGCAATACTGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGACATGGGGGAGGGAACAGTGTGTCACCGAGTACTAGCAACCTTGGATATGGAGGTGGCGACAACAGTTATGGTTTGGGGACAGCGTATGGAAGAAGCAGTGGTACCACTCTTGCACCAACGTCTTCATACTCTGCATCAAATGGAGGTGTTGATGGCGCTTTTGCTGATTTTTACAACAATAGTTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGCGAGATGGATCTGGTCCTTTTGGTTATGGACTTGGTGGTGCAGCTTCAGATGTTCCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGAATCGCTACATAG 1434 0.4435 MQSDNGKLFIGGISWDTNEERLREYFSAFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAELVIKEKHNIDGRMVEAKKAVPRDDQNILNRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYNYGLSRVNSFLNGFTQGYTPSTVGGYGLRVDGRFSPVAGGRSGFAPFGSGYGMSMNFEPGLSAGFGGNANFNSNLSYGRGLSPYFIGNSNRFGSPVGYDSGNGGNNSFFSSVTRNLWGNGGLSYGTSSANSSAYIGSGSGSVGGNTFGNTGVNWGSSAISGHGGGNSVSPSTSNLGYGGGDNSYGLGTAYGRSSGTTLAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVPAKSSPGYVGGYTVNKRQPNRGIAT* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00091 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 473 - -
Rops9g00091 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Rops9g00091 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Rops9g00091 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Rops9g00091 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Rops9g00091 477 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Rops9g00091 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Rops9g00091 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Rops9g00091 477 MobiDBLite consensus disorder prediction 427 477 - -
Rops9g00091 477 Gene3D - 103 189 IPR012677 -
Rops9g00091 477 Gene3D - 4 88 IPR012677 -
Rops9g00091 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
Rops9g00091 477 SMART rrm1_1 107 179 IPR000504 GO:0003723
Rops9g00091 477 CDD RRM2_Hrp1p 107 184 - -
Rops9g00091 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Rops9g00091 477 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00091 Rops-Chr9 1135476 1140919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00091 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 33.155 3.03e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00091 K14411 - gmx:100795907 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00091 9 1135476 1140919 Rops9g00091 9 1135476 1140919 ECH