Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops9g00065 | ATGGGGGATAATGATGCAAAGCAAGTATATGATGAAGAAGCTTTCTTGTTGGCTATGGAACTATCAGGTGCCTCTGCTGTTCCCATGGTGCTGAAGTCAGCTTTGGAGCTTGGAATCATAGAAACTATAGCCAAGGCTGGTGATGGAGCTTACCTTTCACCTTCACAAATAGCTTCTCAGCTTCCATCAATAAAGAACCCAGATGCACCTGCTATGCTGGATCGCTTGTTGCGCCTGTTGGCAAGCTACAACATCCTCACAAACTCCTTTTCTCAAGATTCTAAGGGTGAAAGGGTCTATGGTCTTCACCCTCGTGCCAAATACTTTGTCAACAATCAAGATGGTGTCTCCATGATTTCTTCCTTTCTCATGCAACACGACAAAGTCCTCAAAGACATGTGGTATCACTTGACAGAGTCAATTCAGGAGGGTGGGCTTCCATTTAACAATGCATATGGAATGACTGCCTTTGAATTCCATGGCACAAATCCAAGGTTCAACAAGCTTTTCAACAAGGGCATGTCTGATCACTCTAGAATCGTAATGGAGAAAATTCTTGAGAACTATACAGGCTTTAAGGGTGTTGGATCTGTGGTTGATGTTGGTGGTGGCACTGGAGCTATTATTAACATGATTGTCTCTAAGTATCCCACCATAAAGGGCATTAATTTTGACTTGCCCCATGTGATCAAAGAAGCTCCATCTTATCCAGGTGTGGAGCATGTTGGTGGAGACATGTTTGTCAGTGTTCCAAAAGGTGATGCCATTTTCATGAAGTGGATATGTCATGACTGGAATGACGAGCAATGCTTGAAGTTTTTGAAGAACTGCTATGATTCCCTTCCTGGGACAGGGAAGGTGATTTTGGCTGAATGCATTATTCCAGAAGTCCCTGACTCTAACTTGGCCTCAAAGACTGTGTTTCAAATGGATGTTATCATGTTGTGTCATAGCTCAGGTGGAAGAGAGAGAACAGAGAAACAGTATGAGGCCTTGGCTAAGGGGGCAGGATTCCAAGGTTTCCGAGTAGCATGCAGTGCTTTCAACATGTATGTCATGGAATTTCTTAAGAAGGCTTAG | 1080 | 0.4352 | MGDNDAKQVYDEEAFLLAMELSGASAVPMVLKSALELGIIETIAKAGDGAYLSPSQIASQLPSIKNPDAPAMLDRLLRLLASYNILTNSFSQDSKGERVYGLHPRAKYFVNNQDGVSMISSFLMQHDKVLKDMWYHLTESIQEGGLPFNNAYGMTAFEFHGTNPRFNKLFNKGMSDHSRIVMEKILENYTGFKGVGSVVDVGGGTGAIINMIVSKYPTIKGINFDLPHVIKEAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWNDEQCLKFLKNCYDSLPGTGKVILAECIIPEVPDSNLASKTVFQMDVIMLCHSSGGRERTEKQYEALAKGAGFQGFRVACSAFNMYVMEFLKKA* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops9g00065 | 359 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 114 | 354 | IPR029063 | - | |
| Rops9g00065 | 359 | PANTHER | O-METHYLTRANSFERASE | 19 | 341 | IPR016461 | GO:0008168 | |
| Rops9g00065 | 359 | Gene3D | - | 2 | 109 | IPR036388 | - | |
| Rops9g00065 | 359 | Pfam | O-methyltransferase domain | 134 | 339 | IPR001077 | GO:0008171 | |
| Rops9g00065 | 359 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 19 | 357 | IPR016461 | GO:0008168 | |
| Rops9g00065 | 359 | PIRSF | O-mtase | 2 | 357 | IPR016461 | GO:0008168 | |
| Rops9g00065 | 359 | FunFam | Caffeic acid 3-O-methyltransferase | 2 | 109 | - | - | |
| Rops9g00065 | 359 | Gene3D | Vaccinia Virus protein VP39 | 110 | 357 | IPR029063 | - | |
| Rops9g00065 | 359 | SUPERFAMILY | "Winged helix" DNA-binding domain | 11 | 112 | IPR036390 | - | |
| Rops9g00065 | 359 | FunFam | Caffeic acid O-methyltransferase | 110 | 357 | - | - | |
| Rops9g00065 | 359 | Pfam | Dimerisation domain | 29 | 81 | IPR012967 | GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops9g00065 | Rops-Chr9 | 864588 | 867536 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops9g00065 | 8 | 358 | Monolignol Biosynthesis Gene Families | AT5G54160 | 64.306 | 1.72e-174 | 488 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops9g00065 | K13066 | - | gmx:100780100 | 508.449 |