Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00055 ATGGCGCAGCTTCCCTGTGACGCTGATGGCCTCTGTATGCTCTGTAAAAACAAGCCACCTCCCTCCGAGACTCTCGCTTGCAATACCTGTACCACTCCCTGGCACGTTCCGTGCCTTCCCCTCCCTCCAACTTCCCTTCTCGATTGGGACTGCCCTGACTGTTCCCACCTCCAACCCGACCATGTCGCCGCCCCTGCTCCGCCTCCCGGCGACCTCGTCTCCGCCATCCGTGCTATTCAGTCTGATACTTCGCTCACAGAGGAAGAGAAGGCCAAGAAGCGACAGGAGCTTGTTGGTGGGTCCTCGAAGCCATCTGGTGATAAGAACAATGGAAATGGGGGGATTGATATCTTCAATGGAAGCTTAAACTGTTCTTTCTGCATGCAGTTACCCGATAGGCCCGTCACGACACCTTGTGGGCACAACTTTTGTCTGAAGTGCTTCGAGAAATGGATCGGACAAGGAAAACGCACTTGCGCTAATTGTCGCAGTGGAATCCCTGCAAAGATGGCAAGCCAGCCAAGAATCAACTCTCAGTTGGCCATAGCCATCCGATTGGCAAGATCGGAGGGAAGTGGAGCCGCCAAGACAGCCAAGGTGTATCACTTTATGCACAACCAGGACCGTCCAGACAAGGCTTTCACCACTGAGAGAGCGGTGAAGACTGGGAAGGCGAATGCTTGTAGTGGGAAGATCTTTGTGACTGTTCCTCCTGACCATTTTGGACCGATCCCAGCTGAGAATGATCCGACGAGGAATAGGGGTGTTTTGGTGGGAGATACTTGGGAGGATAGGATGGAATGTAGACAGTGGGGTTCTCATCTTCCTCATGTTGCTGGTATTGCTGGTCAGAGTAGTTATGGGGCTCAGTCTGTGGCACTTTCTGGTGGTTACATTGATGATGAGGATCACGGTGAGTGGTTCCTCTATACTGGTAGTGGCGGGAGAGACCTTAGTGGCAACAAACGCACTAACAAGCTCCAGTCCTTTGACCAGAAGTTTGAGAACATGAATGAGGCCTTGAGACTGAGTTGTAAGAAAGGTTATCCAGTTCGTGTTGTCAGGTCCCACAAGGAGAAACGTTCATCATACGCACCAGATGCTGGAGTGCGATATGACGGGGTTTACAGAATAGAGAAATGCTGGCGTAAAAATGGTATACAGGGTTGCAAGGTTTGCAGATATTTGTTTGTGAGATGTGACAATGAACCAGCACCATGGACAAGTGATCTTTGTGGAGACCGCCCCCGCCCACTGCCTGAAATTGAAGAACTGAAGGGTGCAATTGATATAACTGAAAGGAAGGGTGCTCCATCATGGGATTATGATGAGGAAAAGGGCAGCTGGTTGTGGAAGAAGCCTCCACCACAAAGCAAGAAATCAATAGACATCGTAAACCCTGAAGATGGGACAAAAGTAAGAGTTAAAAGAAAAGCAAAAACTTTGTCTGTCAAAGAAAGGCTATTGAGAGAGTTTGGTTGCCATATCTGTCACAAGGTGTTGGCTTTCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGCTTGGAGGGTGCCTTCTCTGGCCAAAGTTTCATCAGGAAGAGGGCATGTGAAGGTGGACGCAGTTTAAGGGCACAGAAGAACATTATGAAATGCCCATCATGTTCAAATGACATAGCTGACTTTCTTCAGAATCCACAGGTAAACAGAGAAATGATGGGTATTATAGAATCACTCCAGCGCCAGGCTGAACAGGTGCAGGAGAATTCGGAAGAGTCAAGTGATAAAAATGATGAGAATCTGAATGATGGAACAGAAGTTTCAAAGCCCAGTGATTCAAGTGAAAATGTCTTGGAGGAAATTAAAGACAATGATCTGAATCAGCCAGACAAGCGGAAGAAAGGTGGTAGTAGTACGGTTGTGGTGAACGTAGAGGAACTTATTGATGAGGCATGA 1944 0.4846 MAQLPCDADGLCMLCKNKPPPSETLACNTCTTPWHVPCLPLPPTSLLDWDCPDCSHLQPDHVAAPAPPPGDLVSAIRAIQSDTSLTEEEKAKKRQELVGGSSKPSGDKNNGNGGIDIFNGSLNCSFCMQLPDRPVTTPCGHNFCLKCFEKWIGQGKRTCANCRSGIPAKMASQPRINSQLAIAIRLARSEGSGAAKTAKVYHFMHNQDRPDKAFTTERAVKTGKANACSGKIFVTVPPDHFGPIPAENDPTRNRGVLVGDTWEDRMECRQWGSHLPHVAGIAGQSSYGAQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRLSCKKGYPVRVVRSHKEKRSSYAPDAGVRYDGVYRIEKCWRKNGIQGCKVCRYLFVRCDNEPAPWTSDLCGDRPRPLPEIEELKGAIDITERKGAPSWDYDEEKGSWLWKKPPPQSKKSIDIVNPEDGTKVRVKRKAKTLSVKERLLREFGCHICHKVLAFPLTTPCAHNFCKACLEGAFSGQSFIRKRACEGGRSLRAQKNIMKCPSCSNDIADFLQNPQVNREMMGIIESLQRQAEQVQENSEESSDKNDENLNDGTEVSKPSDSSENVLEEIKDNDLNQPDKRKKGGSSTVVVNVEELIDEA* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00055 647 Pfam RING-type zinc-finger 494 549 IPR027370 -
Rops9g00055 647 SUPERFAMILY PUA domain-like 225 419 IPR015947 -
Rops9g00055 647 SUPERFAMILY FYVE/PHD zinc finger 4 62 IPR011011 -
Rops9g00055 647 ProSiteProfiles Zinc finger RING-type profile. 494 552 IPR001841 -
Rops9g00055 647 MobiDBLite consensus disorder prediction 83 112 - -
Rops9g00055 647 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 591 IPR045134 -
Rops9g00055 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 481 606 IPR013083 -
Rops9g00055 647 ProSiteProfiles Zinc finger PHD-type profile. 9 57 IPR019787 -
Rops9g00055 647 Gene3D - 222 414 IPR036987 -
Rops9g00055 647 SMART PHD_3 11 55 IPR001965 -
Rops9g00055 647 ProSitePatterns Zinc finger PHD-type signature. 12 54 IPR019786 -
Rops9g00055 647 Coils Coil 565 592 - -
Rops9g00055 647 SUPERFAMILY RING/U-box 117 170 - -
Rops9g00055 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 66 IPR013083 -
Rops9g00055 647 SMART G9a_1 246 403 IPR003105 -
Rops9g00055 647 CDD RING-HC_ORTHRUS_rpt1 121 167 IPR047498 -
Rops9g00055 647 MobiDBLite consensus disorder prediction 83 97 - -
Rops9g00055 647 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 480 598 - -
Rops9g00055 647 ProSiteProfiles Zinc finger RING-type profile. 124 163 IPR001841 -
Rops9g00055 647 FunFam Predicted protein 88 189 - -
Rops9g00055 647 MobiDBLite consensus disorder prediction 609 628 - -
Rops9g00055 647 SMART ring_2 494 551 IPR001841 -
Rops9g00055 647 SMART ring_2 124 162 IPR001841 -
Rops9g00055 647 SUPERFAMILY RING/U-box 487 577 - -
Rops9g00055 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 188 IPR013083 -
Rops9g00055 647 MobiDBLite consensus disorder prediction 584 601 - -
Rops9g00055 647 Pfam SAD/SRA domain 254 402 IPR003105 -
Rops9g00055 647 MobiDBLite consensus disorder prediction 577 647 - -
Rops9g00055 647 ProSitePatterns Zinc finger RING-type signature. 509 518 IPR017907 -
Rops9g00055 647 Pfam Zinc finger, C3HC4 type (RING finger) 122 166 - -
Rops9g00055 647 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 222 417 - -
Rops9g00055 647 ProSiteProfiles YDG domain profile. 251 399 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00055 Rops-Chr9 727594 731248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00055 3 582 C2H2 Transcription Factor Family AT5G39550 63.652 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00055 K10638 - gmx:100781044 1069.3