Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00052 ATGAACATGGCGACCATTATTCAACAGAATGCCAACCAAAGTGTTTCCTCCAAGTCCGAGGAGTGCTTCTGTGTGAGTGACTCAGACCCCCTGAACTGGGGTATGGCAGCGAATTCACTCAAGGGTAGCCACTTTGACGAAGTAAAACGCATGGTGGCAGAGTACCGGAAGCCAGTGATCTCTTTGGGTGATGGGGAGACACTAACTATATCACAGGTGGCTGCTGTTGCTAACAGTAACTCACAGGTTAAGGTTGACCTCTCGGAGTCTGCTAGGGCAGGAGTTGAGGCAAGTTGCGAGTGGATCATGGAAAACATTAACAAAGGCACTCCCATTTATGGTGTTACCACTGGCTTTGGTACTGCCTCCAACAGACGAACCCAACAAGGCCTTGCTCTTCAGAAGGAGATGGTTAGGTTTTTAAACTGCGCAATGTTTGGCTATGAAACGGAGTTATCTCATACGCTGCCTCGGTCAGCAACCAGAGCAGCTATGCTTGTGAGGGTTAATACCCTTCTTCAAGGGTATTCGGGCATTAGATTTGAAATCTTAGAAGCTATCACCAAACTCATGAACCACAATGTCACCCCCATCTTGCCATTACGCGGTACAATTACTGCTTCTGGTGATCTGATTCCTCTGTCCTACATAGCTGCATTGCTAATCGGTAGGCGAAACTCCAAAGCTGTTGGACCCTCTGGAGAGTCCCTTAATGCCAAGGAAGCTTTCCATTTAGCAGGTATGGATTCTGGGTTCTTTGAGTTGAAGCCCAAGGAAGGCCTTGCCCTCGTAAATGGCACAGCTGTTGGATCTGGCGTAGCTTCTATGGTACTTTTTGAGGCAAACATATTAGCTTTATTGTCAGTAGTCCTATCAGCAGTTTTTACTGAAGTCATGCAGGGAAACCCAGAATTTACACATCATCTTATACACAAGTTAAAGTACCATCCCGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTAGATGGAAGCTCTTATATCAAAAACGCTAAACTGCAACAGCCAGATCCGTTGCAGAAGCCTAGAAAAGATCGTTATGCTCTTCAAACTTCTCCTCAGTGGCTTGGTCCACAGATTGAAGTCATCAGGTATTCGACCAAATCAATTGAAAGGGAGATAAATTCAGTGAATGACAATCCTTTGATTGATGTCACCAGCAACAAGGCTTTGAATGGTGGTAATTTCCAAGGGACCCCAATCGGAGTTTCAATGGATAATGCACGTTTAGCCATTGCTTCAATTGGCAAACTCATCTTTGCCCAATTTACCGAGCTAGTTAATGACTTGTATAATAATGGGTTGCCATCAAATCTTTCTGCTGGTAGAAACCCGAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGTTCTGAACTTCAATATTTAGCAAATCCGGTAACGAACCATGTGCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGCTTAATTTCTGCCTGGAAAACTGTCGAAGCCGTTGAGATATTGAAGCTCATGTCTTCCACATATTTGGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTGGAGGAAATTTTTAAGAACACAGTCAGGAATACTGTAAGCAGAGTTGCAAAGAAGGCATTAACCACAGAAGACAAAGAAGAAATTAACCCATTTCGATTTTGTGAGAAAGATTTGCTCAAAGTGGTTGATAGAGAATATGTATTCTCCTACATTGATGATCCCTTCAACGTTACATACCCATTGATGCCAAAACTAAAGCAAGTTCTTTATGAGCAAGCACACATCAGTGCCATTAATGACAAAAATGTGAGCTTGTCAACTTTTGAGAAGATTGGAGCTTTTGAGGATGAATTGAAGTCTCTATTGCCCAAGGAAGTGGAAAGTGCAAGGGTGGCTTATGAGAATGGCAATCCGGCAATTCCAAACAGAATTAAGGAATGTAGGTCATACCCACTATACAAGTTTGTGAGGGAGGAATTAGGGGCAGGTTTGCTGACTGGAGATAAGACTGTTTCACCAGATGAGGAATTTGAAAAAGTACTTACAGCAATGTGTCAAGCAAAGATTATTGACCCAATTCTGGAATGCCTTGGAGATTGGAACGGACTTCCGGTCCCAATATAA 2160 0.4329 MNMATIIQQNANQSVSSKSEECFCVSDSDPLNWGMAANSLKGSHFDEVKRMVAEYRKPVISLGDGETLTISQVAAVANSNSQVKVDLSESARAGVEASCEWIMENINKGTPIYGVTTGFGTASNRRTQQGLALQKEMVRFLNCAMFGYETELSHTLPRSATRAAMLVRVNTLLQGYSGIRFEILEAITKLMNHNVTPILPLRGTITASGDLIPLSYIAALLIGRRNSKAVGPSGESLNAKEAFHLAGMDSGFFELKPKEGLALVNGTAVGSGVASMVLFEANILALLSVVLSAVFTEVMQGNPEFTHHLIHKLKYHPGQIEAAAIMEHILDGSSYIKNAKLQQPDPLQKPRKDRYALQTSPQWLGPQIEVIRYSTKSIEREINSVNDNPLIDVTSNKALNGGNFQGTPIGVSMDNARLAIASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSLDYGFKASEVAMAAYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISAWKTVEAVEILKLMSSTYLVALCQAIDLRHLEEIFKNTVRNTVSRVAKKALTTEDKEEINPFRFCEKDLLKVVDREYVFSYIDDPFNVTYPLMPKLKQVLYEQAHISAINDKNVSLSTFEKIGAFEDELKSLLPKEVESARVAYENGNPAIPNRIKECRSYPLYKFVREELGAGLLTGDKTVSPDEEFEKVLTAMCQAKIIDPILECLGDWNGLPVPI* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00052 719 Gene3D Fumarase/aspartase (Central domain) 268 714 - -
Rops9g00052 719 PANTHER HISTIDINE AMMONIA-LYASE 22 719 IPR001106 -
Rops9g00052 719 CDD PAL-HAL 66 530 IPR001106 -
Rops9g00052 719 SUPERFAMILY L-aspartase-like 29 719 IPR008948 GO:0003824
Rops9g00052 719 Gene3D - 21 267 IPR024083 -
Rops9g00052 719 Pfam Aromatic amino acid lyase 68 533 IPR001106 -
Rops9g00052 719 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 203 219 IPR022313 GO:0016841
Rops9g00052 719 FunFam Phenylalanine ammonia-lyase 20 267 - -
Rops9g00052 719 Gene3D - 533 654 IPR023144 -
Rops9g00052 719 NCBIfam phenylalanine ammonia-lyase 29 709 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00052 Rops-Chr9 692386 694684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00052 23 719 Monolignol Biosynthesis Gene Families AT2G37040 73.496 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00052 K10775 - gmx:100787872 1238.79