Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00049 ATGGCTACACAAGCTCTAGTATCTTCATCATCTCTTACCTTCTCAGCGGAGGCTGCCAAGCAGAGTCTTGGAGCAAGATCACTCCAATCTTCAATTGGGTTCTCCAGAAAAGGCTCCTTTATTGTCAAGGCAGCTTCTACTCCTCCTGTCAAGCAAGGAGCAGATAGACCCTTGTGGTTTGCATCAAAGCAGAGTCTTTCTTACTTGGATGGCAGCCTTCCCGGTGACTATGGATTTGACCCTCTCGGACTTTCAGACCCTGAAGGAACAGGAGGTTTCATTGAACCAAGATGGCTAGCATATGGCGAGGTCATCAATGGTCGTTATGCAATGTTGGGTGCAGTTGGTGCCATTGCACCTGAGATTCTTGGCAAGGCTGGTCTGATTCCTGAGGAAACAGCACTCCCATGGTTCAAAACCGGTGTAATTCCACCTGCAGGAACATACAACTACTGGGCAGACCCTTACACACTGTTTGTGCTTGAGATGGCACTCATGGGATTTGCAGAGCACAGGAGATTCCAAGATTGGGCCAATCCTGGTTCTATGGGCAAGCAGTACTTCTTAGGACTAGAGAAAGGTTTAGGTGGTTCTGGTGACCCAGCTTACCCTGGTGGACCTTTGTTTAACCCTCTTGGTTTTGGTAAGGATGAGAAATCCATGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGGAGGTTGGCCATGTTGGCAATCTTGGGCTACTTTATTCAAGGTCTTGTGACAGGTGTTGGTCCATACCAAAACCTCCTTGATCATTTGGCTGACCCTGTGAACAACAATGTCTTGACCAGTCTCAAGTTCCACTGA 831 0.4765 MATQALVSSSSLTFSAEAAKQSLGARSLQSSIGFSRKGSFIVKAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPEETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00049 276 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 8 271 IPR001344 GO:0009765|GO:0016020
Rops9g00049 276 FunFam Chlorophyll a-b binding protein, chloroplastic 57 275 - -
Rops9g00049 276 Pfam Chlorophyll A-B binding protein 67 245 IPR022796 -
Rops9g00049 276 SUPERFAMILY Chlorophyll a-b binding protein 55 272 - -
Rops9g00049 276 Gene3D Chlorophyll a/b binding protein domain 58 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00049 Rops-Chr9 684236 686812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00049 19 276 Chloroplast and Mitochondria Gene Families AT1G61520 87.209 2.71e-167 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00049 K08909 - gmx:100784090 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00049 9 684236 686812 Rops9g00049 9 684236 686812 ECH