Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00045 ATGGAGGAGATGCAACAGCTGCTGAGCATGGGCTTCCCTGACGAGTTAGCCGCCCAAGCCTTGGCTGCCACCGGCGGAAAATCCACCGTTAAAGCCACCGAATGGATTCTCACCAACAAATCCAACTCCAACAATCCCTCTTCAACATTTCAGCCCAAACTCGATCGTTTCTTCTATTCCCAGACCACAACCTCACAACCCACTGATCATCCACAACAAGAAGAACAAGAAGAAGTAGAAGAGGCATCAACCAAACGCATCAAGTTATCACCATCACCCACTTCTCACTCCCAACCACTGCCAAAGTCTTCCTTTTTCTTCAATCGCCCCAAGACTAATACTATTCCAGATAAGAAACACACTCACATTCACGAACCCTTGTACGAGAGGTTGCGTCCCAGAACCTTGGATGACGTGGTGGGTCAGGACCATCTCCTCGCACCCAATTCCCTTCTTCGTTCTGCAATCCAACGCAACCGTCTACCTTCAATCTTGTTGTGGGGTCCACCTGGCACTGGTAAGACCACCATTGCCAAAGCTATTGTCAATTCAGCAGCATCCACTTGTTATCGCTTTGTCTCCTTATCTGCTGTCACTAGCGGCGTCAAAGATGTCAGGGATGCTGTCGACGAGGCAAGAAAACTCAGACTTAAAAACAACCAAACTACTGTTTTGTTTGTGGATGAGGTTCACAGGTTCAATAAGTCTCAACAGGACTCTTTCTTACCCGTCATTGAAGATGGCAGTATTGTCTTCATTGGGGCCACTACTGAGAACCCTTCTTTCCATTTGATTACGCCCCTTTTGTCTCGTTGCCGTGTCCTTACCCTCAATCCTCTTCAACCCCACCATCTTGCTTTGCTTCTAAACCGAGCTGTCAATGACCTTGAAAAAGGGTTGGTCCAAAGCCTCGGTTTTCAAGTTGATGTCAGTGTTGGTGAGGATGTGGTTGATTTTATAGGCAACAATTGTGATGGGGATGCCCGGGTGGCCTTGAATGCCTTGGAGATTGCTGCTGTTACTGCAGCTGCTCGCGTACAACAACATGTGAAGCACTCGAAACACATGGAAGAAGAAGGTGTTGTGGACATTCCCACGAATGAGGAATCCAAGGTTGTTGTTACTGTTGATGATGCAAAGGAGGCACTTCAATGCAAGCACCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATCTGATCAGTGCCCTGCACAAGTCTATGAGGGGAAGTGATGCAAATGCGGCAATTTATTGGTCGGCAAGAATGTTACAAGGAGGTGAAGAGCCTCTTTACATTGCACGTAGGCTTATAAGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCTTCTGCTCTTACTCAAGCTGTTTCCTGCTACCAGGCTTGCCACTTTTTGGGAATGCCAGAGTGCAATGTGATTCTTGCACAGTGTGTTGCTTACTTGGCCTTAGCTCCTAAATCTATCGCAGTTTATAGAGCAATAGAAGCGGCTCAGAAGGTGGTAAGGGAATCAGTTGGACAGAATGAGGGGGTGCCTCTTCATCTCAGGAATGCACCAACCAAATTAATGAAGGAAATTGGATATGGGAAGGGATACATATACCCTCCCGACAACCCCTCCTCAACACAGACCTACTTACCCCCCTCACTTCAAGGGTACAAGTTCCTTGATTGGCCTGACAAGAATCCCTCTGATGGTTAA 1704 0.4724 MEEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTNKSNSNNPSSTFQPKLDRFFYSQTTTSQPTDHPQQEEQEEVEEASTKRIKLSPSPTSHSQPLPKSSFFFNRPKTNTIPDKKHTHIHEPLYERLRPRTLDDVVGQDHLLAPNSLLRSAIQRNRLPSILLWGPPGTGKTTIAKAIVNSAASTCYRFVSLSAVTSGVKDVRDAVDEARKLRLKNNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVNDLEKGLVQSLGFQVDVSVGEDVVDFIGNNCDGDARVALNALEIAAVTAAARVQQHVKHSKHMEEEGVVDIPTNEESKVVVTVDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWSARMLQGGEEPLYIARRLIRFASEDVGLADPSALTQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIAVYRAIEAAQKVVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYPPDNPSSTQTYLPPSLQGYKFLDWPDKNPSDG* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00045 567 PRINTS CbxX/CfqX superfamily signature 163 178 IPR000641 GO:0005524
Rops9g00045 567 PRINTS CbxX/CfqX superfamily signature 327 339 IPR000641 GO:0005524
Rops9g00045 567 PRINTS CbxX/CfqX superfamily signature 212 231 IPR000641 GO:0005524
Rops9g00045 567 Pfam ATPase family associated with various cellular activities (AAA) 164 274 IPR003959 GO:0005524|GO:0016887
Rops9g00045 567 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 39 IPR015940 -
Rops9g00045 567 SUPERFAMILY post-AAA+ oligomerization domain-like 394 560 IPR008921 GO:0003677|GO:0006260
Rops9g00045 567 CDD AAA 140 273 - -
Rops9g00045 567 MobiDBLite consensus disorder prediction 87 108 - -
Rops9g00045 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 357 IPR027417 -
Rops9g00045 567 FunFam AAA-type ATPase family protein 280 358 - -
Rops9g00045 567 Gene3D - 114 278 IPR027417 -
Rops9g00045 567 FunFam Putative AAA family ATPase 384 487 - -
Rops9g00045 567 Pfam UBA/TS-N domain 3 36 IPR015940 -
Rops9g00045 567 Gene3D - 384 487 - -
Rops9g00045 567 Pfam MgsA AAA+ ATPase C terminal 410 557 IPR021886 -
Rops9g00045 567 Gene3D - 488 564 - -
Rops9g00045 567 MobiDBLite consensus disorder prediction 62 108 - -
Rops9g00045 567 FunFam Replication-associated recombination protein A 118 279 - -
Rops9g00045 567 SUPERFAMILY UBA-like 4 47 IPR009060 GO:0005515
Rops9g00045 567 SMART AAA_5 160 280 IPR003593 GO:0016887
Rops9g00045 567 MobiDBLite consensus disorder prediction 71 85 - -
Rops9g00045 567 Gene3D - 280 358 - -
Rops9g00045 567 Pfam AAA C-terminal domain 309 409 IPR032423 -
Rops9g00045 567 Gene3D - 1 49 - -
Rops9g00045 567 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 563 - -
Rops9g00045 567 CDD HLD_clamp_RarA 280 384 - -
Rops9g00045 567 SMART uba_6 2 38 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00045 Rops-Chr9 656907 658756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00045 126 410 Core DNA Replication Machinery Family AT1G77470 26.087 4.69e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00045 K07478 - gmx:100799257 853.203