Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00030 ATGGAAGAGAGATGTGCAGATGCTGATACTGTGTCCGATCCTTCTCAGACAAAGACATGTGGTGGTGGAGGTGGTGGTGGTGAAAATGAAAAAGGTGACAAGGCCTCCTTGATTCCTCCTCAGTCCAGAAGACCTGCCCTCTCCTCGCTACAAATACCAGCATGGTCACTGGATATTGCATTATCTTCTTTTGCAAAAACTGATGGTCCTTCACTTTCACTGTCAAGTCCTGGTTCCACTACTAGAGGACTTCCCCCGAGGCCGAATTCAGCCAAAGTCAGGTCTTCCATGAAAAGTTTACTTCCTCAGAGGAGCTTCAGGACAAAAACTAGTTCCTGGGATGCTGAAAGGACAGTTCTCATAGTTCCTGATACTCCCCCATCAGATGCTCCTTTGAATAAACCTTCCACTTCAAAGTCTCTGTCTCTTAATAGTAAGGTCATCTTCTCCCCATCAACAAAAGCTGCACATTCATTACCAGTTACTCCAATTGCAACTTCAGGTGCAGAGAATACGCATCGAAGACATCTAGGGTGTGATTCTGGTTTAAGTACAATGGAAGTTCAGCAGCATATGACTCGATCACTTTCAGTTCCAGTTAATGGCAAAGCCACTAAATTAAGGTGTACAGGTTCTAGGGGCTTGATTCGGGTAATTTCAGCAAAACCACATCTTGAAACTGTTGGTGGAACCTCAACTGATGACGCTTCAGTTCCAGAGATTGCCACTGATGATGCTACTGAGGATATTCCAGAAGAAGAAGCAGTTTGTAGGATTTGTTTCGTGGAGCTTGGGGAAGGAGGGAATACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAAGACTGTGCAGTGAAGTGGTTTAGTATTAAAGGGAACAGGACCTGTGATATCTGCAAGCAGGATGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTATCATCCTCAAACTGCTGCTAGGCAGCCATCAAATATGGCACAACAGAGGGAAATAGATTTTTACAGGCAGGTTCTGGCAGGATGTACCAGTACTTATCGTGGTCAGCATGCTTGCTTACTTTTGCTTTCTAGAGCAACTACTGTTTACCAGGTTTCAGATTTGGGTCCTCGTGCTCTTGCCATTTCACTACCTTTCTCCTGTGTTTTAGGGCTCCTTTCATCCATGATTGCATCAACCATGGTGAGCAGGAGTTTCATATGGGCTTATGCTTGCTTCCAGTTTGCAATTCTTATCCTGTTGGCTCATGTATTTTATACTATTCTCAATGTTAATGCAATTCTGTCCATTCTCCTTTCCTCGTTCACTGGATTTGGGATTACAATCAGTGTGAATTCTCTCCTTATGGAATTTATTAGATGGAGAGCAAGTAGGCAGATTCGATCTTCCAATGATCAAGTACAACAACAGGCACAAGAAGAGCATCATCAACGACAAAGACAACAGCAAGAGCATCATCAATGA 1479 0.4354 MEERCADADTVSDPSQTKTCGGGGGGGENEKGDKASLIPPQSRRPALSSLQIPAWSLDIALSSFAKTDGPSLSLSSPGSTTRGLPPRPNSAKVRSSMKSLLPQRSFRTKTSSWDAERTVLIVPDTPPSDAPLNKPSTSKSLSLNSKVIFSPSTKAAHSLPVTPIATSGAENTHRRHLGCDSGLSTMEVQQHMTRSLSVPVNGKATKLRCTGSRGLIRVISAKPHLETVGGTSTDDASVPEIATDDATEDIPEEEAVCRICFVELGEGGNTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDICKQDVQNLPVTLLKIYHPQTAARQPSNMAQQREIDFYRQVLAGCTSTYRGQHACLLLLSRATTVYQVSDLGPRALAISLPFSCVLGLLSSMIASTMVSRSFIWAYACFQFAILILLAHVFYTILNVNAILSILLSSFTGFGITISVNSLLMEFIRWRASRQIRSSNDQVQQQAQEEHHQRQRQQQEHHQ* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00030 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 312 IPR013083 -
Rops9g00030 492 Pfam RING-variant domain 257 304 IPR011016 GO:0008270
Rops9g00030 492 Coils Coil 469 489 - -
Rops9g00030 492 CDD RING_CH-C4HC3_MARCH 257 305 - -
Rops9g00030 492 MobiDBLite consensus disorder prediction 67 109 - -
Rops9g00030 492 MobiDBLite consensus disorder prediction 470 492 - -
Rops9g00030 492 ProSiteProfiles Zinc finger RING-CH-type profile. 249 311 IPR011016 GO:0008270
Rops9g00030 492 PANTHER OS02G0165000 PROTEIN 31 478 - -
Rops9g00030 492 MobiDBLite consensus disorder prediction 476 492 - -
Rops9g00030 492 SUPERFAMILY RING/U-box 253 308 - -
Rops9g00030 492 SMART ringv_2 256 305 IPR011016 GO:0008270
Rops9g00030 492 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00030 Rops-Chr9 520013 525965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00030 240 311 C3H Transcription Factor Family AT2G37950 47.945 4.63e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00030 - - gmx:100789461 645.966