Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00028 ATGGGTTGTTGCCAATCATCGTTGTTGAGGTTGAGGGGAGTGAAAGATGGGGAGACTCAGGCGGAAAATGAAAAGGAAAAGGAAAAGTTAAAGGAAAAGGAACAACAACAACAACCCTACCGCAACCACAATCACAATCACAGTCTCTCCCAATCCCAAACTGACACTGACTCAGTGCTGGTCCTCGATCCTTCTTCCTTCTCCTTCACGGAGTTCTCCTTGGCTGACCTCAAAGCTGCCACCAACAATTTCAGCTCCGACTATATCGTCTCTGAGAGTGGGGAGAAAGCACCCAACCTGGTTTACAAGGGTCGTCTACAGAGTCAGAATCAGAATCAGAATCGGCGTTGGATTGCGGTGAAGAAGTTCAGCAAGGCTGCCTGGCCCGATCCCAAGCAATTTGTTGAAGAATCTTCTGGAGTTGGGAAATTGCGCCATCCCAGGCTTGCTAATTTGATCGGTTACTGCTGTGATGGCGATGAGAGGCTCCTCGTTGCTGAGTACATGCCTAATGACACTCTCGCCAAGCACCTCTTCCATTGGGAAAACCAGACCATTGAGTGGGCCATGCGCTTGAGGGTCGCTCTTTATATTGCTCAGGCTTTACATTATTGCACTTCTGAGGGTCGCCCCTTATACCATGATTTGAATGCTTATCGCGTTCTTTTCGATGAGGAAGGGGATCCGCGTCTTTCCTGTTTTGGTTTAATGAAGAACAGCAGGGATGGAAAGAGTTATAGCACAAACCTTGCTTACACACCTCCTGAGTATTTAAGGAATGGAAGGGTCACCCCTGAAAGTGTCATTTACAGCTTCGGAACTGTTCTTCTGGACCTGCTAAGTGGCAAGCACATCCCTCCTAGCCATGCACTTGATATGATACAAGGAAAAAACAACATGCTCTTGATGGATTCACATTTGGAGGGAAAGTTTTCTACAGAAGAGGCAACAGTAGTTGTTAATCTTGCTTCTAAATGTTTGCAATATGAACCGAGGGAGCGGCCTAATACAAAGGATTTGGTCACAACACTTGCTCCACTGCATACAAAACCTGATGTTCGTTCTCACATCATGCTTGGAATTCCAAAACAAGAGGAAGCTCCATCAACCCCACAACGTCCTCTATCAGCAATGGGTGAGGCTTGTTCAAGAATGGACCTCACTGCAATACACCAGATCTTGGTTGCCACACACTACAGAGATGATGAAGGGACGAATGAGTTGTCGTTCCAAGAGTGGACTCAACAGATGAGAGATATGCTAGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAGGATTTTAAGACAGCCATTGATAACTATTCCCAGTTCATTGATGTGGGAACGATGGTCTCGCCAACTGTTTTTGCAAGGCGCAGTCTATGCTATCTGTTATGTGATCAACCAGATCCTGCACTTCGAGATGCAATGCAAGCACAATGCGTTTATCCAGACTGGCCCACGGCTTTCTACATGCAATCAGTTGCTCTTGCAAAGCTGGACATGCACAAGGATGCGGCTGACATGTTAAATGAGGCAGCTGCATTGGAAGAGAAGAGGCAAAGAGGGGCGAGAGGATCATAA 1590 0.4686 MGCCQSSLLRLRGVKDGETQAENEKEKEKLKEKEQQQQPYRNHNHNHSLSQSQTDTDSVLVLDPSSFSFTEFSLADLKAATNNFSSDYIVSESGEKAPNLVYKGRLQSQNQNQNRRWIAVKKFSKAAWPDPKQFVEESSGVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAQALHYCTSEGRPLYHDLNAYRVLFDEEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPNTKDLVTTLAPLHTKPDVRSHIMLGIPKQEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKRQRGARGS* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00028 529 Pfam Protein tyrosine and serine/threonine kinase 101 344 IPR001245 GO:0004672|GO:0006468
Rops9g00028 529 SUPERFAMILY Protein kinase-like (PK-like) 72 348 IPR011009 -
Rops9g00028 529 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 34 524 IPR045845 GO:0004672|GO:0009742
Rops9g00028 529 Gene3D Tetratricopeptide repeat domain 418 527 IPR011990 GO:0005515
Rops9g00028 529 MobiDBLite consensus disorder prediction 14 56 - -
Rops9g00028 529 SUPERFAMILY TPR-like 421 522 IPR011990 GO:0005515
Rops9g00028 529 Gene3D Phosphorylase Kinase; domain 1 61 168 - -
Rops9g00028 529 MobiDBLite consensus disorder prediction 15 40 - -
Rops9g00028 529 FunFam probable serine/threonine-protein kinase At4g35230 418 527 - -
Rops9g00028 529 Coils Coil 16 38 - -
Rops9g00028 529 FunFam probable serine/threonine-protein kinase At5g41260 170 361 - -
Rops9g00028 529 Gene3D Transferase(Phosphotransferase) domain 1 170 361 - -
Rops9g00028 529 ProSiteProfiles Protein kinase domain profile. 87 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00028 529 FunFam probable serine/threonine-protein kinase At4g35230 63 168 - -
Rops9g00028 529 MobiDBLite consensus disorder prediction 41 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00028 Rops-Chr9 494156 502416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00028 72 352 Glycoside Hydrolase AT3G07070 34.983 1.89e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Rops9g00028 PK_Tyr_Ser-Thr 4.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00028 K14500 - gmx:100808907 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00028 9 494156 502416 Rops9g00028 9 494156 502416 ECH