Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00021 ATGAGGGATTGTGATAGTGGAGGAGAAGGAGAAAGAGAGCATGGTCGTAGTGGGAAGCGTTGGAGCAGCAATAACAGCAAGATGGAGGAAGGGTCGTCAAAGGGGATTCCGCGTCCCTGCAGCGAGTGCGGCAAGAAGTTCTGGTCTTGGAAGGCTCTCTTTGGCCACATGCGATGCCATCCAGAGCGTCAATGGAGAGGCATCAATCCCCCTCCCAATCTCAGAAGACAACAACAACAACAACAACACTCCACCACCATAATGACCCAGGAGGATCACGAGGTTGCCGCTTGTTTGCTCTTACTTGCCAATTCAAATGCAAATGCAAATGCAAACGAGGGGATCACTTCTTCCACTCACTTCTTCGAATGCTCCAGTTGCAACAAGGTCTTTGGATCACACCAGGCTCTTGGAGGCCACAGGGCTAGTCACAAGAATGTCAAGGGTTGTTTCGCCAATGCCATAACAACCCCTACTACCAGGACGTGGACCCAAGGCCATGTTACTGACCCCATCAACATCATGATGCTTCATAGGTATGATCATGTTCATAACGGTGCGGGTACCAGTTCCACCACCACAACTGCCACTACCATGGGGGAGGGGGAGGCCGACGCAGAGGCGGATGAGAGTGGGGGCCACAAGTGTGACATATGCCTCAGGGTGTTCTCCACTGGCCAAGCCCTGGGTGGTCACAAGAGGTGTCACTGGGACAGAGGGGACAATCTTATTGATTCCACACCCAAGTCTCTTGTTGACTTGAATTTGCCTCTTCCTCTTGACCATGACCATGATGATGATGATGGCAATGAGGATCATTCCTCCTCTTCTCCCCTCACTCTGGATTTGAGGTTGGGACTCTAG 864 0.5174 MRDCDSGGEGEREHGRSGKRWSSNNSKMEEGSSKGIPRPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNLRRQQQQQQHSTTIMTQEDHEVAACLLLLANSNANANANEGITSSTHFFECSSCNKVFGSHQALGGHRASHKNVKGCFANAITTPTTRTWTQGHVTDPINIMMLHRYDHVHNGAGTSSTTTTATTMGEGEADAEADESGGHKCDICLRVFSTGQALGGHKRCHWDRGDNLIDSTPKSLVDLNLPLPLDHDHDDDDGNEDHSSSSPLTLDLRLGL* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00021 287 MobiDBLite consensus disorder prediction 1 37 - -
Rops9g00021 287 MobiDBLite consensus disorder prediction 186 200 - -
Rops9g00021 287 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Rops9g00021 287 MobiDBLite consensus disorder prediction 1 20 - -
Rops9g00021 287 SUPERFAMILY beta-beta-alpha zinc fingers 213 238 IPR036236 -
Rops9g00021 287 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Rops9g00021 287 MobiDBLite consensus disorder prediction 255 287 - -
Rops9g00021 287 MobiDBLite consensus disorder prediction 186 208 - -
Rops9g00021 287 Gene3D Classic Zinc Finger 120 236 - -
Rops9g00021 287 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 17 287 - -
Rops9g00021 287 SMART c2h2final6 122 144 IPR013087 -
Rops9g00021 287 SMART c2h2final6 214 236 IPR013087 -
Rops9g00021 287 SMART c2h2final6 38 60 IPR013087 -
Rops9g00021 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Rops9g00021 287 MobiDBLite consensus disorder prediction 64 84 - -
Rops9g00021 287 Pfam C2H2-type zinc finger 214 238 - -
Rops9g00021 287 Pfam C2H2-type zinc finger 39 62 - -
Rops9g00021 287 Pfam C2H2-type zinc finger 122 145 - -
Rops9g00021 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 236 IPR013087 -
Rops9g00021 287 MobiDBLite consensus disorder prediction 258 273 - -
Rops9g00021 287 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Rops9g00021 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Rops9g00021 287 SUPERFAMILY beta-beta-alpha zinc fingers 38 144 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00021 Rops-Chr9 397474 398337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00021 26 287 C2H2 Transcription Factor Family AT4G35280 46.667 7.75e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops9g00021 zf-C2H2_6 2.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00021 - - gmx:100792631 218.394