Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00020 ATGGAATATAGTACGTTAGTGCAGGAATCGGCGTTTGGGAGCTTGTCAGAGTGTGGATCAGTGGAAGAAGCCGATATGATAGAGGAGGTGTTGGAAGAAGGATGCTGGGTGGAAGCGAGTGGTGGGATTGGGAGTGAATGTGGAGAGGAAAGTTTAGTGGTGGGGAAGAGATGGTGGATAGAACCAAAGGGTAATAATACAGGGCCTTCTTCTTCAGTGAAAGAGAGATTAGTGGTTGCAGTGGGGTACTTGAAAGAATACACAAAGAACTCCAATCTGTTGATTCAGATATGGGTGCCCCCAAGGAGAGGGCTTCACTGCCACACAAATGTTTCCAATCCAGATGACTCCGTTTCGATTGGTTTTCCCATGAGTCCCAACCCAAATCCAAACCAAAACGTAAACGTTCGGTTCTTTAGAAGCCACGAGTACCAGCGGGTTCATTATGCGCAGTACGATGTGAGTGGATGTTTGGCCCTTCCCGTCTTTGAAAGAGGCAGTGGGACATGCCTTGGTGTCATCCAGATTGTTGTCACCAACCAAAGCATCATCAACTACCAAAAACAACTTGACAATGTCTGCAACCCTCTCGAGGCTGTTGTTGATTTTAGAAGTAGTCAGAACTTCATTCCACCTGCAGTAAAGGTATATGATGAGTTGTACCAAGCAGCACTGAATGAGATCGTAGAGGTGTTGACGTCGGTGTGCAAGACACACAATTTACCTTTAGCTCTAACTTGGGCCCCTTGCATCCAACAAGGAAAGTGTGGATGTGCGGTTTCTACTGAGAATTATGTGTGCTGCGTCTCCACAGTGGATTCTGCATGTTATGTGGCGGATCTAGACATATTGGGATTCCAGGAAGCGTGTTCTGAGTATCACCTTTTCCGTGGACAAGGAATAGTTGGCACAGCCTTCACAACAAGCAAACCATGTTTCGCTATTGATATAACCGCCTTTAGTAAAGCTGAATATCCTTTGGCTCATCATGCAAAGATGTTTGGCTTGCATGCCGCTGTGGCCATTCCTTTGAGGAGTGTCTTCACTGGACCGGCTGAGTTTGTGTTGGAGTTTTTTCTACCAAAGAACTGCCATGACAGCGAAGAGCAGAAACAGATGCTGAGCTCACTGTCCATAGTGGTACAACAAGCTTGCAGGAGCTTGCATGTAGTGATGGAGGATGAAGATATTAGCCACCATGATCAGAAACTATTTGCATGTTCCTCACAGTCACGAGTAGAAGCAGAATCATCATGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGCGTGTCTGTATCAGTGGAATGCCTTGAAGAGCCAAAGGAAGAGTTCAAAGTGACAACCAGCTGGGAAGGCATTGATCAGACGCAGGAGCAGGTGTTTTCAGATTTTGGGCAAATGGAGCAAAGTTCAGGGTCAAGATTCAAAGCAAGTGCTGATACATTTGGTGGCCGTCGTTCCTCTTCGGGTGGGAGAAAGTCAGGTGAGAAGAGACGAACCAAGGCAGAGAAAACTATCAGCTTGCCAGTTCTAAGACAATACTTTGCAGGAAGCCTAAAAGATGCAGCCAAGAGCATTGGTGTATGTCCCACAACTTTGAAAAGGATTTGCAGACAGCATGGTATTACCAGGTGGCCTTCAAGGAAAATCAAGAAGGTGGGCCATTCTTTAAAGAAGCTTCAACTGGTGATCGATTCAGTTCAGGGTGCTGAGGGTGCCATACAGATTGGCTCCTTCTATTCCAGTTTTCCAGAGCTGAGCTCTGCAGATTTCTCTGCCAGTGGCCCTCCTGAATCATCCAAGAAAATGCATAATTATCCTCAGAACAGCTTGTATGGCCATGGAGATGGAGTTACCAGTTTAAAATCCCCACCTTCTTCTTGTAGTCAGACATTTGGTGCAACCGTATCCACTGCCACTGCAGGAAACCAATCTTCTACTTTGATCAACACCGTATCCGTATCTAACTCTCATAATGGAGATGTCTTAATGACAGAAAGCACTGCTCCTGATGCATTGCTCAGGAGAGCTCACAGTGAAGCAGAGCTGCATGCATCAATCCAAGAGGATACAAAACATTTCAGCAGACCCAAGAGTCGAACACTACCTCCCTTGACTGAAACTAGTACCTGGAACTCACTAGAAAGGGGTGCTTTCAGAGTCAAAGCAACTTTTGGGGATGAAAAAATCCGCTTTAGCTTGCAACCAATTTGGGGGTTCAGAGATTTGCAGCTAGAGATTGCAAGACGTTTCAATCTCAACGATATAAGCAACATAGTTCTCAAGTACTTTGACGATGATGGGGAGTGGGTTGTTTTAGCATTCGATTCTGATCTTGAGGAGTGTAAAGATTTGCATAGATCATCTCAGAGCCGCACAATAAGACTTTCACTGTTTCAAGCTTCACCTCTAAATCTCGGAAACACGTTCCGAAACAGCAGCAGCCCATCATAA 2463 0.4572 MEYSTLVQESAFGSLSECGSVEEADMIEEVLEEGCWVEASGGIGSECGEESLVVGKRWWIEPKGNNTGPSSSVKERLVVAVGYLKEYTKNSNLLIQIWVPPRRGLHCHTNVSNPDDSVSIGFPMSPNPNPNQNVNVRFFRSHEYQRVHYAQYDVSGCLALPVFERGSGTCLGVIQIVVTNQSIINYQKQLDNVCNPLEAVVDFRSSQNFIPPAVKVYDELYQAALNEIVEVLTSVCKTHNLPLALTWAPCIQQGKCGCAVSTENYVCCVSTVDSACYVADLDILGFQEACSEYHLFRGQGIVGTAFTTSKPCFAIDITAFSKAEYPLAHHAKMFGLHAAVAIPLRSVFTGPAEFVLEFFLPKNCHDSEEQKQMLSSLSIVVQQACRSLHVVMEDEDISHHDQKLFACSSQSRVEAESSWIAHMMEAQQKGKGVSVSVECLEEPKEEFKVTTSWEGIDQTQEQVFSDFGQMEQSSGSRFKASADTFGGRRSSSGGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYSSFPELSSADFSASGPPESSKKMHNYPQNSLYGHGDGVTSLKSPPSSCSQTFGATVSTATAGNQSSTLINTVSVSNSHNGDVLMTESTAPDALLRRAHSEAELHASIQEDTKHFSRPKSRTLPPLTETSTWNSLERGAFRVKATFGDEKIRFSLQPIWGFRDLQLEIARRFNLNDISNIVLKYFDDDGEWVVLAFDSDLEECKDLHRSSQSRTIRLSLFQASPLNLGNTFRNSSSPS* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00020 820 Pfam PB1 domain 722 803 IPR000270 GO:0005515
Rops9g00020 820 MobiDBLite consensus disorder prediction 689 710 - -
Rops9g00020 820 Gene3D - 720 806 - -
Rops9g00020 820 ProSiteProfiles PB1 domain profile. 721 804 IPR000270 GO:0005515
Rops9g00020 820 ProSiteProfiles RWP-RK domain profile. 495 576 IPR003035 -
Rops9g00020 820 SMART PB1_new 721 804 IPR000270 GO:0005515
Rops9g00020 820 MobiDBLite consensus disorder prediction 472 491 - -
Rops9g00020 820 Pfam RWP-RK domain 509 556 IPR003035 -
Rops9g00020 820 MobiDBLite consensus disorder prediction 593 636 - -
Rops9g00020 820 MobiDBLite consensus disorder prediction 472 505 - -
Rops9g00020 820 CDD PB1_NLP 722 803 IPR034891 -
Rops9g00020 820 PANTHER PROTEIN NLP8 67 816 IPR045012 GO:0003700
Rops9g00020 820 SUPERFAMILY CAD & PB1 domains 711 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00020 Rops-Chr9 370327 373703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00020 55 813 NLP Transcription Factor Family AT4G35270 47.774 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Rops9g00020 PB1 1.1e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00020 - - pcin:129292760 938.717