Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00016 ATGGGAAATTGCTGGGGTTCTCCTCCTCAGAACCCAACTCCAAGCCCAAGCCCAACCCCAACAGGAACTGCTACACCGGGGGCATCCCAGATGACCGGTAGCAGCTATGCTACTACTTCTTCTGGAAGTGGGAGCAGCTCCATGAATAGCAAGTTCTCGGTGTCAAGTGGTGGCGAACCTTATATAAATGGCCAGATCTTACCTACCTCAAATTTGAGGATCTTCACTTTTGCGGAGTTGAGGGCTGCAACTAGGAATTTCAGACCTGAGACACTACTTGGGGAGGGAGGTTTTGGAAAAGTCTACAAGGGTTGGCTTGAAGAGAAGGCATCGTCAAAGAATGGAAGTGGAACTGTCATTGCCGTCAAAAAGTTGAACTCGGAAAGCTTACAAGGATTGGAGGAGTGGCAGTCAGAGGTAAATTTTCTAGGACGCCTTTCTCATCCTAACCTTGTTAAGCTGTTGGGATACTGTTTGGAGGAATCAGAGCTTCTTCTCGTCTATGAATTCATGCAGAAGGGCAGTCTGGAACATCATCTATTTGGAAGGGGCTCTGCTGTTCAACCACTTCCTTGGGACATCAGGCTCAAGATTGCAATTGGGGCAGCTCGTGGCCTTGCATTCTTGCATACATCCGAGAAAGTAATTTACAGAGACTTCAAGGCCTCCAATATATTGCTTGATGGGTCCTATAATGCAAAGATATCAGACTTTGGCTTGGCAAAACTGGGTCCTTCAGCTAGTCAATCCCATGTGACAACAAGGGTGATGGGCACATATGGTTATGCGGCTCCTGAATATGTGGCCACAGGGCATCTATATGTGAAGAGTGACGTTTATGGGTTTGGAGTTGTTTTAATCGAGATACTAACAGGCCTACGAGCACTTGATCCCAACCGTCCAAGTGGGCAACTGAACCTAACAGAGTGGGTGAAACCATACCTACAGGATAGAAGAAAATTGAAGAGCATTATGGATTCTCGATTGGAAGGAAGATATCCATCTAAAGCTGCATTTCGTATTGCTCAGTTAGCCTTTAAATGTCTTGGAGCTGAGCCCAAAATGCGCCCATCGATGAAGGAAGTTTTGGACAACTTGGAGCGAATTCAAGCTGCCAATGACAAAATTGTGGAGCCTAAATCCCGCTCTTCTGCTCACACCCGTGCTACTCACCAGGCTGTGCACCACCGTTCTCCACTTCATACAAAGCACGACGGTTATGAAAACTAA 1230 0.4675 MGNCWGSPPQNPTPSPSPTPTGTATPGASQMTGSSYATTSSGSGSSSMNSKFSVSSGGEPYINGQILPTSNLRIFTFAELRAATRNFRPETLLGEGGFGKVYKGWLEEKASSKNGSGTVIAVKKLNSESLQGLEEWQSEVNFLGRLSHPNLVKLLGYCLEESELLLVYEFMQKGSLEHHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLIEILTGLRALDPNRPSGQLNLTEWVKPYLQDRRKLKSIMDSRLEGRYPSKAAFRIAQLAFKCLGAEPKMRPSMKEVLDNLERIQAANDKIVEPKSRSSAHTRATHQAVHHRSPLHTKHDGYEN* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00016 409 SUPERFAMILY Protein kinase-like (PK-like) 61 366 IPR011009 -
Rops9g00016 409 ProSitePatterns Protein kinases ATP-binding region signature. 93 124 IPR017441 GO:0005524
Rops9g00016 409 MobiDBLite consensus disorder prediction 373 409 - -
Rops9g00016 409 FunFam Serine/threonine-protein kinase PBS1 171 386 - -
Rops9g00016 409 Pfam Protein tyrosine and serine/threonine kinase 91 366 IPR001245 GO:0004672|GO:0006468
Rops9g00016 409 Gene3D Transferase(Phosphotransferase) domain 1 171 394 - -
Rops9g00016 409 ProSiteProfiles Protein kinase domain profile. 87 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00016 409 MobiDBLite consensus disorder prediction 1 54 - -
Rops9g00016 409 CDD STKc_IRAK 93 369 - -
Rops9g00016 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Rops9g00016 409 PANTHER OS01G0588500 PROTEIN-RELATED 45 370 - -
Rops9g00016 409 MobiDBLite consensus disorder prediction 22 54 - -
Rops9g00016 409 Gene3D Phosphorylase Kinase; domain 1 71 170 - -
Rops9g00016 409 FunFam Serine/threonine-protein kinase BIK1 54 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00016 Rops-Chr9 307349 310476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00016 69 374 Glycoside Hydrolase AT3G07070 49.355 7.17e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops9g00016 PK_Tyr_Ser-Thr 7.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00016 - - gmx:100305417 641.728