Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00014 ATGCAGCTAGCCTACCATGGTTTCTGGATGAATCTGCTGTGCCTTGCATTAACATTGATCCTATTACATGGAGCACCAGGGGAAGGAGCTTCCACACGTGATGTCGTCAAAATTGGTGCCATTTTCACATTAAGAACTATAAATGGACGAGTTTCAAAAATTGCCGTAGAAGCTGCTGAGAAAGATGTGAATTCCGATCCTCGCGTCTTGGGTGGACGTAAATTGTCCATAACCATCCATGATTCCAACTTCAGTGGTTTTCTTAGCTTCATTGGGGCCCTCAAGTTCTTGGTGACTGACACTGTAGCTATAATTGGACCACAAAATTCAGTAATGGCCCATGTGCTTTCGCATCTTGCAAATGAGCTCCATGTTCCTCTACTGTCCTTCACGTCTCTGGATCCCACCCTAACACCTCTTCAGTATCCTTATTTTGTCCAAACAGCACCCAGTGACATGTTCCAGATGACTGCAGTTGCGGACATGATTAGTTATTTTGGTTGGAGACAAGTCATTGCAGTTTATAGTGATGATGATCAGAGTCGAAATGGGGTAACTGTATTAGGAGATAAACTTGCTGAGAGACGCTGCAAGTTATCTTACAAAGCAGCACTGCCCCCTGATCCAACCGCCACTCCAAGTGATGTTGCTGATCAGTTGGTGAAGATTACAAGCATGGAAGCTCGAGTAATTGTTGTACACACCTTTGCGCAAACAGGTGTCTTGGTTTTTGACCAGGCTCAAAAACTAGGGATGATGAGCAAAGGGTATGTCTGGATAGCTACTGCTTGGCTATCAACTGTTTTGGATTCAACTCCATCACTACCTTTAAATACTTGTAACTCGATTCAAGGAGTTCTTACACTTCGCCCTCACACTCCTCAATCAAGAAAAAGGCAGGCATTTATCTCAAGGTGGAACCACATAAGTAATGGCTCAATTGGGTTGAATCCATATGGACTATATGCTTATGATTCCGTTTGGATGATTGCTCATGCATTGAGATTATTTTTTGATCAGAATGGAACCATTTCATTCTCCAATATTACAAATTTAAGTGGTATGAGGGGGGAGACTCTGGATCTTGGTGCTTTGAACGTTTTTGATGGAGGGAAACAATTACTTGATAACATATTGCGCATTAATATGACTGGGTTGACAGGATCTATTCAATTTGGTTCAGACAGATCCCCTATACGTCCATCATATGGCATCCTTAATGTAATTGGTGCTGGTTATAGGCGTATTGGTTACTGGTCTAATTATTCAGGGCTCTCTGTAATAACTCCTGAGAAACTTTACACAAAACCTGCCAACCGTTCATTTTCGAACCAGCGTCTATACGATGTGATATGGCCTGGAAATACAACAGAAAAGCCTCGTGGATGGGTTTTCCCAAATAATGGAAGGCAACTGAGGATTGGAGTTCCCAACAGACTTAGTTATCGGGACATGGTGTCACAAATAAATGGCACCAATGCAGTTCAAGGATATTGCGTAGATATATTCCTGGCCGCCTTAAAATTGCTTCCATATGCAGTTCAATATAGGTTCATTCTGTTTGGAGATGGACATAAGAACCCAAGCTACTATGATCTTGTCAATATGATTGCTTCTGATGCTTTTGATGCTGCTATAGGTGACATCTCTATTGTCACTAACCGAACAAAGATTGTGGATTTTACTCAACCGTATATAGAGTCGGGTTTAGTTGTGGTAGCTCCAGTAAAGAAGTTGAAGTCAAGTGCTTGGGCTTTCTTGCGACCATTTACTCCACAAATGTGGGGCGTCACAGCACTTTTTTTCCTTTTTGTTGGAGCAGTGGTGTGGATTCTTGAACATAGAACTAATGACGAGTTTCGGGGGCCTCCAAAGAAACAGATGGTTACAATTCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCACAGGGAAAACACAGTTAGTCCACTTGGTCGTATGGTGTTGATAATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACTGCAAGCTTGACGTCAATTCTCACGGTGCAGCAGTTGTCTTCACCCATAACAGGCATTGATACCTTGATAACCAGCAATAAACCTATAGGGTTCCAAGTAGGGTCATTTGCTGAAAATTATCTGACCGAGGAACTCAGTATCCCAAAACATAGACTTGTTCCTCTTGGCTCACCAGAAGAATATGCTATTGCCCTTGAGAATGGAACTGTTGCAGCAGTGGTAGATGAACGACCATATGTAGAACTCTTCCTGTCAAACCACTGCCAGTTCTCAATTAGAGGCCCAGAGTTCACCAAAGGTGGATGGGGATTTGCATTCCCGAGGGACTCTCCTTTGGCAATTGATATGTCAACAGCCATTCTGAATCTATCTGAGAATGGTGAACTTCGGAGGATCTATGAAAAGTGGCTTTCGGAGAGGCATTGTGGTTTTCATAGTAGTACTCAGGATGAGCAGCTTCAATTAAATAGCTTCTGGGGCTTGTTTCTAATATGTGGGATAGCATGTTTCCTGGCGCTTCTTATCTACCTCTTTTCAATGGTACGCCAATTCAGTCAAAACTCCCCTCACAAAGCCGATCCTTCTAATCGTTGCAGATCACACTCTGCACGCATCCAGACTTTTCTCAATTTTGTTGATGAAAAAGAAGACATCTCACACAAGAAGTTCAAAAGAAAACTTGAGGATATTTCATCCGATGCTCATCCCACACAAAATCACTCGAGGAGCACATCCAAGAGAATACAGATGGACATTTCCCAAGAGGCTCCTTATGCTTCAACTTCGCTTCATTAA 2808 0.4241 MQLAYHGFWMNLLCLALTLILLHGAPGEGASTRDVVKIGAIFTLRTINGRVSKIAVEAAEKDVNSDPRVLGGRKLSITIHDSNFSGFLSFIGALKFLVTDTVAIIGPQNSVMAHVLSHLANELHVPLLSFTSLDPTLTPLQYPYFVQTAPSDMFQMTAVADMISYFGWRQVIAVYSDDDQSRNGVTVLGDKLAERRCKLSYKAALPPDPTATPSDVADQLVKITSMEARVIVVHTFAQTGVLVFDQAQKLGMMSKGYVWIATAWLSTVLDSTPSLPLNTCNSIQGVLTLRPHTPQSRKRQAFISRWNHISNGSIGLNPYGLYAYDSVWMIAHALRLFFDQNGTISFSNITNLSGMRGETLDLGALNVFDGGKQLLDNILRINMTGLTGSIQFGSDRSPIRPSYGILNVIGAGYRRIGYWSNYSGLSVITPEKLYTKPANRSFSNQRLYDVIWPGNTTEKPRGWVFPNNGRQLRIGVPNRLSYRDMVSQINGTNAVQGYCVDIFLAALKLLPYAVQYRFILFGDGHKNPSYYDLVNMIASDAFDAAIGDISIVTNRTKIVDFTQPYIESGLVVVAPVKKLKSSAWAFLRPFTPQMWGVTALFFLFVGAVVWILEHRTNDEFRGPPKKQMVTILWFSFSTMFFAHRENTVSPLGRMVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDTLITSNKPIGFQVGSFAENYLTEELSIPKHRLVPLGSPEEYAIALENGTVAAVVDERPYVELFLSNHCQFSIRGPEFTKGGWGFAFPRDSPLAIDMSTAILNLSENGELRRIYEKWLSERHCGFHSSTQDEQLQLNSFWGLFLICGIACFLALLIYLFSMVRQFSQNSPHKADPSNRCRSHSARIQTFLNFVDEKEDISHKKFKRKLEDISSDAHPTQNHSRSTSKRIQMDISQEAPYASTSLH* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00014 935 Gene3D - 774 807 - -
Rops9g00014 935 MobiDBLite consensus disorder prediction 900 920 - -
Rops9g00014 935 Pfam Bacterial extracellular solute-binding proteins, family 3 490 809 IPR001638 -
Rops9g00014 935 SUPERFAMILY Periplasmic binding protein-like II 450 810 - -
Rops9g00014 935 FunFam Glutamate receptor 583 713 - -
Rops9g00014 935 FunFam Glutamate receptor 709 812 - -
Rops9g00014 935 SMART GluR_14 473 810 IPR001320 GO:0015276|GO:0016020
Rops9g00014 935 Gene3D - 583 713 - -
Rops9g00014 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 877 IPR015683 -
Rops9g00014 935 FunFam Glutamate receptor 151 310 - -
Rops9g00014 935 CDD GluR_Plant 470 808 - -
Rops9g00014 935 Pfam Ligand-gated ion channel 810 840 IPR001320 GO:0015276|GO:0016020
Rops9g00014 935 PIRSF IGluLR_plant 5 934 IPR017103 -
Rops9g00014 935 FunFam Glutamate receptor 467 583 - -
Rops9g00014 935 Gene3D - 54 400 - -
Rops9g00014 935 Gene3D - 457 582 - -
Rops9g00014 935 Gene3D - 737 773 - -
Rops9g00014 935 SUPERFAMILY Periplasmic binding protein-like I 30 464 IPR028082 -
Rops9g00014 935 SMART AABind_6 471 811 IPR001638 -
Rops9g00014 935 CDD PBP1_GABAb_receptor_plant 37 427 IPR044440 -
Rops9g00014 935 Gene3D - 151 425 - -
Rops9g00014 935 Pfam Receptor family ligand binding region 54 409 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00014 Rops-Chr9 263059 267666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00014 9 918 Ion Channels AT2G17260 60.672 0.0 1144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00014 K05387 - qsu:112010597 1353.96