Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00010 ATGGGCAACACATGCCGTGGATCTTTGAAAGGAAAATATATTCAGGGCTTCAGCCAGCCCGAAGATCATTCAAAGCGCAGCTCCACTCATTCTGATCGCTCCGACTCACACCACCTTCCACCCAAACAAAATCCCAACTCTGCAGATACCAACAACGACAACAATCTCCCCTTCAACTCCAAGAAAGACTCCATCATGCGCCGAGGCCTCGATAACCAAGCATACTATGTCTTGGGTCATAAGACTCCCAACATTCGTGATCTATACACTCTTGGCCGTAAATTGGGACAGGGACAATTTGGCACCACTTATTTATGCACCGAGAATTCCACCTCCATTGAATACGCGTGCAAATCCATCTCCAAGAGGAAGTTGATTTCCAAGGAGGACGTGGAGGACGTTAGGAGGGAAATTCAGATAATGCACCACTTGGCTGGTCACAAGAACATTGTCACCATCAAGGGTGCTTATGAGGATCCACTCTATGTTCATATTGTCATGGAGCTTTGTTCTGGGGGTGAGTTGTTTGATCGCATCATCCAAAGGGGCCACTACACCGAGAGGAAGGCTGCCGAGTTGACCAAAATTATTGTTGGGGTTGTTGAGGCATGTCATTCCCTTGGGGTTATGCACAGAGATCTCAAGCCTGAAAACTTTTTGTTGGTCAATAAGGATGATGATTTCTCTCTTAAAGCAATTGACTTTGGCCTCTCTGTTTTCTTCAAACCAGGTCAAGTTTTCACCGATGTAGTTGGCAGCCCGTACTATGTTGCTCCAGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCAGATGTGTGGACAGCAGGTGTCATACTGTACATATTGCTTAGTGGTGTACCTCCGTTTTGGGCAGAAACCCAGCAGGGTATATTTGATGCAGTATTGAAGGGACATATAGATTTTGACTCAGATCCATGGCCTCTAATATCTGATAGTGCAAAAGATCTGATCAGAAAGATGCTGTGTTCTCGGCCTTCGGAACGGTTGACAGCTCACGAAGTCTTATGTCATCCCTGGATATGTGAAAATGGAGTTGCCCCTGACAGATCACTGGACCCTGCTGTTCTTTCCCGTCTTAAACAGTTTTCTGCAATGAATAAGCTAAAGAAGATGGCTTTACGGGTGATTGCTGAAAGTCTATCTGAAGAGGAGATTGCTGGATTGAGAGAAATGTTTCAGGCTATGGATACTGATAACAGTGGTGCAATCACTTTTGACGAACTCAAAGCTGGTCTAAGAAGATATGGGTCTACCCTTAAGGATACAGAAATACGTGATCTTATGGAAGCGGCTGATGTGGACAATAGTGGAACTATAGATTATGGGGAGTTCATTGCAGCAACAGTTCATCTCAACAAACTAGAGCGTGAGGAACATCTCATTGCAGCATTCCAATATTTTGACAAGGATGGGAGTGGTTATATTACAGTTGATGAACTTCAGCAAGCCTGTGCAGAACATAACATGACCGATGTTTTTCTTGAAGATATTATCAGGGAAGTTGATCAAGATAATGATGGAAGGATCGATTATGGTGAATTTGCTGCCATGATGCAAAAAGGCAATGCTGGAATTGGTAGGAGGACTATGCGCAACAGTCTGAATTTGAGCATGAGAGATGCACCGGGTGCTCATTAG 1659 0.4461 MGNTCRGSLKGKYIQGFSQPEDHSKRSSTHSDRSDSHHLPPKQNPNSADTNNDNNLPFNSKKDSIMRRGLDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSTSIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSAKDLIRKMLCSRPSERLTAHEVLCHPWICENGVAPDRSLDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIREVDQDNDGRIDYGEFAAMMQKGNAGIGRRTMRNSLNLSMRDAPGAH* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00010 552 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Rops9g00010 552 Gene3D Phosphorylase Kinase; domain 1 91 174 - -
Rops9g00010 552 Pfam EF-hand domain pair 395 455 IPR002048 GO:0005509
Rops9g00010 552 Pfam EF-hand domain pair 465 526 IPR002048 GO:0005509
Rops9g00010 552 ProSiteProfiles EF-hand calcium-binding domain profile. 501 531 IPR002048 GO:0005509
Rops9g00010 552 FunFam Calcium-dependent protein kinase 1 91 174 - -
Rops9g00010 552 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Rops9g00010 552 Gene3D - 357 529 - -
Rops9g00010 552 ProSiteProfiles Protein kinase domain profile. 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00010 552 CDD STKc_CAMK 89 346 - -
Rops9g00010 552 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Rops9g00010 552 Pfam Protein kinase domain 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00010 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Rops9g00010 552 MobiDBLite consensus disorder prediction 1 64 - -
Rops9g00010 552 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Rops9g00010 552 MobiDBLite consensus disorder prediction 23 39 - -
Rops9g00010 552 Gene3D Transferase(Phosphotransferase) domain 1 175 356 - -
Rops9g00010 552 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Rops9g00010 552 SUPERFAMILY EF-hand 371 528 IPR011992 -
Rops9g00010 552 FunFam Calcium-dependent protein kinase 5 175 355 - -
Rops9g00010 552 FunFam Calcium-dependent protein kinase 1 355 529 - -
Rops9g00010 552 ProSitePatterns EF-hand calcium-binding domain. 509 521 IPR018247 -
Rops9g00010 552 SMART efh_1 394 422 IPR002048 GO:0005509
Rops9g00010 552 SMART efh_1 500 528 IPR002048 GO:0005509
Rops9g00010 552 SMART efh_1 430 458 IPR002048 GO:0005509
Rops9g00010 552 SMART efh_1 466 494 IPR002048 GO:0005509
Rops9g00010 552 SUPERFAMILY Protein kinase-like (PK-like) 67 371 IPR011009 -
Rops9g00010 552 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Rops9g00010 552 PANTHER SERINE/THREONINE-PROTEIN KINASE 81 521 - -
Rops9g00010 552 SMART serkin_6 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00010 552 MobiDBLite consensus disorder prediction 40 61 - -
Rops9g00010 552 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00010 Rops-Chr9 213020 222559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00010 1 548 EF-hand Containing Proteins AT2G17290 85.246 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops9g00010 Pkinase 6.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00010 K13412 - gmx:100778173 1040.8