Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00004 ATGGTTGGCTTAGGATGTGTAGTGGGAGTGAGAGTTCACCCCAGTTGGCAGCGTCATCCGATTCTTGCTTCTAAATCTGAGGAGGCAGTCACACTGACACGGTCGTGGTCATCGTTCCCTGCAAACAAGAATCATCGTTGCTGCCTTACAATTACAAATGGCCGAATCAGGCAGCCCAGGCGTCCGTTTTCTGTGTCTGACAATAAAGACGGTGACGGAGTGGAGGAAGGAGCTTCTTCTGCTTCAGAACAAGTAGAGCTACAATGGAAGCTCTTCACTGGAAGGATTCGGAACTCGGGATTAATATCTTCATGCTTGGTTGGTCTCCTCACTGGCGTCGCTGTCGTGCTCTTCAATAATGTCGTCCACGAAATTCGTGACTTGTTCTGGGATGGGATTCCGTATCGAGGAGCCTCGTGGTTGAGGGAAGCACCTATTCAGGAAACGTGGACAAGAGTAATACTAGTTCCGGCTTGTGGAGGTGTTATTGTGACTGTGCTGAACCTCCTTCGTTCTGCTGCGGACCAAGCTCCTTCCGCTTACCTCAAGTCTGCTTCCCGCCCTTTCTTGAAGGCTATGGCAGCTTCTGCCACCTTAGGCACTGGTAATTCCTTGGGTCCTGAGGGTCCCAGCGTCGAGATTGGTACCTCCATTGCCAAAGGCGTTGGTTCTACTTCTTTATTTGACAAGAGTTCTGGCAGAATGCTCTCCCTTATCGCCGCTGGATCTGCTGCCGGCCTCTCTGCCGGTTTCAATGCTGCTGTTGCTGGTTGTTTTTTCGCTGTTGAGTCTGTCTTGTGGCCATCTGCAGATGCATCTTTACCACTCACAAATACTACTTCCATGGTAATACTTAGTGCTGTCATAGCATCTGTAGTTTCGGAGATTGGCCTTGGCTCTGAACCAGCCTTTAAAGTTCCAGAGTATGACTTCCGTTCTCCTGGCGAGCTCCCGCTGTATCTATTGCTGGGTATTTTATGTGGCCTGGTGTCATTGGCCCTATCTTGGTGTACATCATATATGTCGACTATTTTTCACAATCTTCACAAGGCAACTGGCTTGCCAAGAGCTTCATTCCCTGTATTGGGAGGCTTATCAGTTGGGTTGATAGCATTGGTATATCCTGAAATCCTCTACTGGGGTTTTGAGAATGTTGACATTTTGCTAGAATCTCGGCCATTTGTTAAAGGCCTTTCCACTGACCTATTGCTTCAGCTAATAGCTGTCAAGACAATTGCAACTTCTCTGTGTCGTGCTTCTGGATTAGTGGGAGGATATTATGCCCCATCTCTTTTTATTGGTGGTGCAACTGGGATGGCTTATGGAAAATTAATTGGTTTTGCGGTTGCCGAGTCTAATCCTATGATTAACTTCTCTGTGTTGGAAGTGGCATCCCCGCAAGCTTATGGCCTGGTTGGAATGGCTGCGACTCTTGCAGGAGTTTGTCAAGTACCACTTACTGCAGTTTTGCTTCTCTTTGAATTGACACAAGACTATCGGATTGTTTTACCACTACTTGGAGCAGTAGGCTTGTCTTCATGGATTTCATCTGTACAGACAAAGAGGGGTGATGATAGGGAGACAGAAAAGCTGAAGTTAGAAAACTCAAATTCTGCTTCACTTCCAGAAATATCTTCCTGTAGTTCAATTGAGTCATCTACTGGCAATACCTTTGCTGAAGGTGTGTCATATTTGAGTAATTTGTGTCAGGTGGAAAGTTCGCTTTGTCTAGAAGATGATAATGTTGAAACGGTAGATTTTGTAAGGAGAACATTTGTTTCAGAAGCCATGAAGACGAGATATGTGACGGTGTCAATGTGCACACTGCTTACTGAAGTGATAGATCTCATGCTTGCCGAGAAACAATCTTGTGCAGTAATTGTTGATGCTGATGATACTTTAATTGGTTTATTGACGCTTAGAGACATTCAAGAGTATGGAAAATTTGCAAAAGCTAGAAGCAAAAACCCAAAGGAGCTTTTAGTTTCTGAATTATGCCTTTTAAATGGAGGAATATGCAGTATACCTTGGACAGCTACTCCTGATATGGAACTTCGTTACGCACAAATGATTATGAAGGAACGTGGAGTCAATCAAGTTCCAGTTGTGAGGAATATCTATGAAAGAACATATCCAGTTGGCATATTAGACCCCGATAGTATCAGTCTAACATGCAGTGCTCTGGCCACCAGACAGTCTCTCAGCTAA 2208 0.4515 MVGLGCVVGVRVHPSWQRHPILASKSEEAVTLTRSWSSFPANKNHRCCLTITNGRIRQPRRPFSVSDNKDGDGVEEGASSASEQVELQWKLFTGRIRNSGLISSCLVGLLTGVAVVLFNNVVHEIRDLFWDGIPYRGASWLREAPIQETWTRVILVPACGGVIVTVLNLLRSAADQAPSAYLKSASRPFLKAMAASATLGTGNSLGPEGPSVEIGTSIAKGVGSTSLFDKSSGRMLSLIAAGSAAGLSAGFNAAVAGCFFAVESVLWPSADASLPLTNTTSMVILSAVIASVVSEIGLGSEPAFKVPEYDFRSPGELPLYLLLGILCGLVSLALSWCTSYMSTIFHNLHKATGLPRASFPVLGGLSVGLIALVYPEILYWGFENVDILLESRPFVKGLSTDLLLQLIAVKTIATSLCRASGLVGGYYAPSLFIGGATGMAYGKLIGFAVAESNPMINFSVLEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGLSSWISSVQTKRGDDRETEKLKLENSNSASLPEISSCSSIESSTGNTFAEGVSYLSNLCQVESSLCLEDDNVETVDFVRRTFVSEAMKTRYVTVSMCTLLTEVIDLMLAEKQSCAVIVDADDTLIGLLTLRDIQEYGKFAKARSKNPKELLVSELCLLNGGICSIPWTATPDMELRYAQMIMKERGVNQVPVVRNIYERTYPVGILDPDSISLTCSALATRQSLS* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00004 735 ProSiteProfiles CBS domain profile. 597 653 IPR000644 -
Rops9g00004 735 Pfam Voltage gated chloride channel 184 516 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops9g00004 735 SMART cbs_1 675 726 IPR000644 -
Rops9g00004 735 SMART cbs_1 600 648 IPR000644 -
Rops9g00004 735 SUPERFAMILY CBS-domain pair 586 716 IPR046342 -
Rops9g00004 735 Pfam CBS domain 593 645 IPR000644 -
Rops9g00004 735 MobiDBLite consensus disorder prediction 59 79 - -
Rops9g00004 735 Gene3D - 589 733 IPR046342 -
Rops9g00004 735 SUPERFAMILY Clc chloride channel 90 519 IPR014743 -
Rops9g00004 735 Gene3D Clc chloride channel 87 536 - -
Rops9g00004 735 MobiDBLite consensus disorder prediction 62 76 - -
Rops9g00004 735 FunFam Chloride channel protein 577 724 - -
Rops9g00004 735 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 90 728 - -
Rops9g00004 735 CDD Voltage_gated_ClC 108 513 - -
Rops9g00004 735 CDD CBS_pair_voltage-gated_CLC_euk_bac 597 722 - -
Rops9g00004 735 PRINTS Chloride channel signature 485 504 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops9g00004 735 PRINTS Chloride channel signature 422 442 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops9g00004 735 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops9g00004 735 PRINTS Chloride channel signature 467 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops9g00004 735 PRINTS Chloride channel signature 244 263 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00004 Rops-Chr9 132958 142803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00004 63 270 Ion Channels AT3G27170 27.386 3.24e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00004 K03281 - gmx:100812959 1080.86