Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04368 ATGGACAAGGGAGGAGACAAAGGAAGCGACTTGTATGCGGTTCTGGGGTTGAACAAGGATTGCACCGCGTCAGAGCTCAGGAATGCCTATAAGAAACTGGCACTGAAATGGCACCCAGATCGCTGTTCAGCTTCCGTCGAAGAAGAAGCAAACAAGAAATTCCAGGCAATCCAGCAAGCTTATTCTGTTTTATCTGACGCCAACAAAAGGTTCTTGTACGACGCGGGAGTCTATGACAGCGATGATGACGAAAACGGCATGGGCGACTTCTTGAACGAAATGGCAACAATGATGAGCCAAACAAAACCCAATGAAAATGGGGAGGAGAGCTTTGAGGAGTTACAACAGATCTTTGAAGAAATGTTTCAAGCGGATATTGCTTCAGCGGGAAGCACCTCTCACACCGCTGCTACTTGTCCTGTTTCATCTGCGTACGTGACTTATAGTGAAAGCTCTAATTCAAATAAACGCAATTCCACTGAGATGAATTTCGGAAAGGCAGATGATACTCCTGACTTCGATTCCAGCTACCAGAACTTCTGTTTAGGGACAGGTGGAGCACCTTCAAGATATCAAGAAGGGAAAGGGAGTAGGAGGAGGAATTCCGGGAGGAGGAGGTAG 621 0.4686 MDKGGDKGSDLYAVLGLNKDCTASELRNAYKKLALKWHPDRCSASVEEEANKKFQAIQQAYSVLSDANKRFLYDAGVYDSDDDENGMGDFLNEMATMMSQTKPNENGEESFEELQQIFEEMFQADIASAGSTSHTAATCPVSSAYVTYSESSNSNKRNSTEMNFGKADDTPDFDSSYQNFCLGTGGAPSRYQEGKGSRRRNSGRRR* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04368 206 ProSiteProfiles dnaJ domain profile. 10 77 IPR001623 -
Rops8g04368 206 CDD DnaJ 10 66 IPR001623 -
Rops8g04368 206 MobiDBLite consensus disorder prediction 150 165 - -
Rops8g04368 206 PRINTS DnaJ domain signature 69 88 IPR001623 -
Rops8g04368 206 PRINTS DnaJ domain signature 30 45 IPR001623 -
Rops8g04368 206 PRINTS DnaJ domain signature 49 69 IPR001623 -
Rops8g04368 206 PRINTS DnaJ domain signature 12 30 IPR001623 -
Rops8g04368 206 PANTHER PUTATIVE, EXPRESSED-RELATED 4 176 - -
Rops8g04368 206 Gene3D DnaJ domain 7 134 IPR036869 -
Rops8g04368 206 SMART dnaj_3 9 69 IPR001623 -
Rops8g04368 206 MobiDBLite consensus disorder prediction 150 206 - -
Rops8g04368 206 Pfam DnaJ domain 10 74 IPR001623 -
Rops8g04368 206 SUPERFAMILY Chaperone J-domain 9 89 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04368 Rops-Chr8 86835415 86838830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04368 12 75 C2H2 Transcription Factor Family AT1G74250 41.791 2.83e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04368 - - lja:Lj3g3v2576120.1 308.145