Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04364 ATGTGTGGAGGTGCTATTATTTCCGACTTCATTCCGGCGGCGGTGACGGCCGATTACCTGTGGCCGGATTTGAAGAAGTCGAGTTCAGGGAAGCAGTTCTCGAAACCCCTAAGGCCTGACTTGGACGATGATTTCGAGGCTGATTTCAGGGAATTCAAGAGCGATTCCGAAAGCGAAGAAGATGATGATGATGATTTGTCGTTCGATGTCAAGCCCTTTGCTTTCTCCTCCTCCAACTCCACCTCTTCTCGATCTACAGCTGTGAAATCTGGGGCATTCAAAGGGCAAGCTGAAAAGTCTGCAAAGAGAAAGAGAAAGAATCAGTATCGGGGAATCCGTCAGCGTCCTTGGGGAAAATGGGCTGCTGAGATCCGTGATCCAAGAAAGGGTGTTCGTGTCTGGCTTGGAACCTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCAAGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAGGAGGCATCAGCTACTTCCTTTAAACGTTCCAAGGCAAATCCACTGGAAAATCTGAACACTGTTCAGCCCAATCTGAGCCACAAGTTCAATGTTGGTAACAATCATGAAGACTACCGTTGTCCCATGGATCTGGATGAACAGAAACCCCTGGTTAACCAGTATGCTAACATGGGCTCTTTTCCTGGCAGTGGAAATGGGTTCACATCCCTTACTTCGGCTGATGATGTGACCCTTTACTTCGGTTCAGACCAGGGAAGTAATTCATTTAATTATTCAGATCTTGGGTGGGGTGAACAGGGCCCAAAGACTCCTGAGATCTCATCCATGCTTTCTGCTCCTCTGGAATGTGAATCTCATTTTGTGCAAGATGCTGACCAGCTGAAAAACTTGCAGTCTAACTCTCAGGATGTGGTACGTGTGCAAGATGAATCCACAAAAACACTGTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAAGTTCCTTGAGATGCCTTATCTCGAAGGGGGTTGGGATGATACTTCATTGGAATCCTTGCTATCTGGAGACACAAGTCAGGATGGTGGAAACCTGATGAACATTTGGAGCTTTGATGACATTCCTTCCATGGCTGGTGGAGGGGCTCCCTATCTCTGTAAATAA 1140 0.4719 MCGGAIISDFIPAAVTADYLWPDLKKSSSGKQFSKPLRPDLDDDFEADFREFKSDSESEEDDDDDLSFDVKPFAFSSSNSTSSRSTAVKSGAFKGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPEEASATSFKRSKANPLENLNTVQPNLSHKFNVGNNHEDYRCPMDLDEQKPLVNQYANMGSFPGSGNGFTSLTSADDVTLYFGSDQGSNSFNYSDLGWGEQGPKTPEISSMLSAPLECESHFVQDADQLKNLQSNSQDVVRVQDESTKTLSEELVDIESELKFLEMPYLEGGWDDTSLESLLSGDTSQDGGNLMNIWSFDDIPSMAGGGAPYLCK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04364 379 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Rops8g04364 379 PANTHER DNA-BINDING DOMAIN 69 267 IPR044808 GO:0003700|GO:0009873
Rops8g04364 379 SUPERFAMILY DNA-binding domain 108 166 IPR016177 GO:0003677
Rops8g04364 379 CDD AP2 108 166 IPR001471 GO:0003700|GO:0006355
Rops8g04364 379 FunFam Ethylene-responsive transcription factor 2 107 166 - -
Rops8g04364 379 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Rops8g04364 379 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Rops8g04364 379 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Rops8g04364 379 MobiDBLite consensus disorder prediction 76 112 - -
Rops8g04364 379 Gene3D AP2/ERF domain 107 167 IPR036955 GO:0003700|GO:0006355
Rops8g04364 379 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Rops8g04364 379 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04364 Rops-Chr8 86765070 86767361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04364 1 372 AP2-EREBP Transcription Factor Family AT3G14230 44.608 2.61e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g04364 AP2 4.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04364 K09286 - gmx:100170723 491.5