Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04355 ATGAGCAAGATCAAACAAACCGTCACTAGAATCTCTGTTTCCTTGCCCACCAAGAACAAGAAGAAGCTCTTGTTGGCTCTCTTCGCTACTCTGCTTATCGTGGCTGCCGTTGTCGCCGGAGTAAGCTCCCGCAAGAAGTCCGGCGACAATGCGGAGTCCTCCCCATCCCATGTCATCATCAAAAGCGCTTGCAGCAGCACATTGTACCCTGAATTGTGCTTCTCCACAATAGCCTCTGAACCTGGAGTTGCCCAGAAAGTTTCCAGTCACAGAGATGTCATAGAGTTGACCATCAACATAACCACCGGAATTGTTCAGCACAATTACTTCACGGTGGAGAAGCTCTTAACCCGAAAGGGCCTCACCAAGAGGCAGAAAACTGCCCTACACGACTGCTTGGAAAACATAGATGAGACCCTGTACGAGCTTGGCAAGGCCAAGGATTCCCTCCACTATGACAAGTCTCAGTCTCTGTCTCAGCATGCTGATGATCTTAAGACTCTTATAAGTTCCGCCATAACCAACCAAGTGACTTGCTTGGATGGTTTCTCTCATGATAAGGCTGACAAAAGCCTCAGGAAATATCTGGAGGCAGGGGAAGTGCACGTGGAGCACTTGTGCAGCAACACATTGGCTATGACCAACAACCTCACTGATACTCACATGGCTAATCACCACCAGAAAAAGATGTTGGGAAGCAACAACAGGAAACTGATGGAGGAGGAGGAGGATGGAATATTCAAGTGGCCTGACTGGATTTCCACCGGAGACAGGCGTCTTCTGCAGGCATCTACGGTGAATCCTGACGTGGTGGTGGCGGCAGACGGCAGCGGGAACTTCAGGACAGTGTCAGCTGCGGTGGCTGCAGCTCCTGAGCAGAGCAGCAAGAGATATGTCATTAAGATCAAAGCAGGAGTGTACACAGAGAATGTGGATGTACCAAAGAAGAAGACTAATATAATGTTCGTGGGTGATGGCAGAACCAACACTATAATCACAGCAAGCAGAAATGTTGTTGATGGCAGCACAACCTTCAACTCTGCCACAGTCGCGGTGGTGGGTGAACGATTCTTGGCCCGAGACATAACCTTCCAAAACACAGCAGGTCCCTCAAAGCACCAAGCAGTGGCCCTTCGAGTTGGTGCTGACCTCTCAGCCTTCTACTTGTGCGACTTTCTTGCATATCAAGACACCCTTTATGTCCACAGCAATCGCCAGTTCTTTGTAAAGTGCTTCATAGCAGGCACAGTTGACTTCATCTTTGGAAACTCAGCTGCTGTGTTCCAAGACTGTGACATCCACGCCAGGCGTCCCAATTCGGGCCAAAAGAACATGGTCACCGCACAAGGACGCGTTGACCCTAATCAAAACACTGGCATTGTCATCCAAAAATGTAGGATTGGTACCACCAAGGATTTGGAAGGTGTCAAGAGCAGCTTCCCTACGTATCTTGGGAGGCCATGGAAGGAATACTCTAGGACTGTGATCATGCAATCAACAATAAGTGATGTGATTCACCCTGCTGGGTGGTTTGAGTGGGATGGGAACTTTGCGTTGAATACTTTGTTTTATGGGGAGTATCAGAACACCGGTGCTGGTGCTGCCACCTCTGGGAGAGTTAACTGGAAAGGGTTCAAGGTCATTACCAGTGCTTCTGAGGCCCAGGCTTTTACTCCTGGGAATTTCATTGCAGGTTCTAGCTGGTTGGGCTCTACTGGATTCCCATTCTCTCTTGGCCTCTAA 1743 0.4928 MSKIKQTVTRISVSLPTKNKKKLLLALFATLLIVAAVVAGVSSRKKSGDNAESSPSHVIIKSACSSTLYPELCFSTIASEPGVAQKVSSHRDVIELTINITTGIVQHNYFTVEKLLTRKGLTKRQKTALHDCLENIDETLYELGKAKDSLHYDKSQSLSQHADDLKTLISSAITNQVTCLDGFSHDKADKSLRKYLEAGEVHVEHLCSNTLAMTNNLTDTHMANHHQKKMLGSNNRKLMEEEEDGIFKWPDWISTGDRRLLQASTVNPDVVVAADGSGNFRTVSAAVAAAPEQSSKRYVIKIKAGVYTENVDVPKKKTNIMFVGDGRTNTIITASRNVVDGSTTFNSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGADLSAFYLCDFLAYQDTLYVHSNRQFFVKCFIAGTVDFIFGNSAAVFQDCDIHARRPNSGQKNMVTAQGRVDPNQNTGIVIQKCRIGTTKDLEGVKSSFPTYLGRPWKEYSRTVIMQSTISDVIHPAGWFEWDGNFALNTLFYGEYQNTGAGAATSGRVNWKGFKVITSASEAQAFTPGNFIAGSSWLGSTGFPFSLGL* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04355 580 Pfam Plant invertase/pectin methylesterase inhibitor 60 213 IPR006501 GO:0004857
Rops8g04355 580 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Rops8g04355 580 Gene3D - 262 580 IPR012334 -
Rops8g04355 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 218 IPR035513 -
Rops8g04355 580 NCBIfam pectinesterase inhibitor domain 25 218 IPR006501 GO:0004857
Rops8g04355 580 FunFam Pectinesterase 56 218 - -
Rops8g04355 580 PANTHER PECTINESTERASE 32 570 - -
Rops8g04355 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 219 IPR035513 -
Rops8g04355 580 FunFam Pectinesterase 263 580 - -
Rops8g04355 580 SMART PMEI_2 55 213 IPR006501 GO:0004857
Rops8g04355 580 Pfam Pectinesterase 269 565 IPR000070 GO:0030599|GO:0042545
Rops8g04355 580 SUPERFAMILY Pectin lyase-like 264 579 IPR011050 -
Rops8g04355 580 CDD PMEI-like_3 62 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04355 Rops-Chr8 86649177 86656847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04355 18 580 Carbohydrate Esterase AT3G14310 68.739 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04355 K01051 - cave:132186541 825.854