Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops8g04354 | ATGCAATCAACAATAAGTGATGTGATTCACCCCGCTGGGTGGTACGAGTGGGATGGGAATTTTGCATTGAACACCTTGTATTATGGAGAGTATCAGAACACAGGGGCTGGTTCTGACACCTCTAGGAGGGTTGAGTGGAGAGGGTTCAAGGTCATTACCAATGCATCTGAGGCCCGGGCTTTTACTGCTGGCAATTTCATTGCAGGTTCTAGCTGGTTGAGCTCCACTAGATTCACATTCTCTCTTGGACTCTAA | 255 | 0.4745 | MQSTISDVIHPAGWYEWDGNFALNTLYYGEYQNTGAGSDTSRRVEWRGFKVITNASEARAFTAGNFIAGSSWLSSTRFTFSLGL* | 85 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops8g04354 | 84 | SUPERFAMILY | Pectin lyase-like | 1 | 83 | IPR011050 | - | |
| Rops8g04354 | 84 | PANTHER | PECTINESTERASE | 1 | 74 | - | - | |
| Rops8g04354 | 84 | Gene3D | - | 1 | 84 | IPR012334 | - | |
| Rops8g04354 | 84 | Pfam | Pectinesterase | 1 | 69 | IPR000070 | GO:0030599|GO:0042545 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops8g04354 | Rops-Chr8 | 86646934 | 86647188 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops8g04354 | 1 | 84 | Carbohydrate Esterase | AT3G14310 | 70.238 | 5.81e-35 | 122 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops8g04354 | K01051 | - | vvi:104880619 | 143.28 |