Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04349 ATGAATGACTCGTCTGCGGCAAGTGACAAATTGGGTGAGTCTCCAGCAGTTGAGTTAACCGGCAAGATTATGGTGGTGGCTATAATTATTCTATTCATGGTTGTTGTATCTGTTCTCTCCTTCCATCTCTATACCAGATGGTTCCGGAGCCGAAGCCGCCGCTTTGTCTTTACATCCGGTCAAGGCGGTGCTATTCGGGCTGGCCTTGATCCTTCTTTGCTCAGGTCCCTACCCGTGTTGGTATTCCAACCCCAAGACTTCAAGGATGGTTTAGAGTGTGCAGTTTGCCTCTCTGAGCTTGTTGAAGGAGAAAAGGCTAGGCTTTTACCTAAATGCAATCATGGGTTTCATGTTGATTGCATTGATATGTGGTTCCAATCCCATTCTACCTGCCCTCTTTGCAGGACCCTAGTTGCCTCAGAGAACAATGAATCATCAGTTGCAGAAAATTCAGCTGATGTCAGTGGCTCACAAGAATCTCCAACTTTTCCCACAAATGTGTTGATTTGGGGGAACCAGACCCAAATAAGTTCCACTGGTGCTTCTTTGGAAGAAAGTACTTCTCAGCAACCTTGTGGTAATAGTGATAGACGTCATGGAATGTTAGTGATTGATATACCAAGTGAGATCACTTCATCCTCCTTATCGCCTTCTACAAGCAGGTTTGCAGAAGATGAGCTTAAATCACCAATAACAGGGAGACTGAGGTCATTGAAGAGGCTTTTGAGTGGGGACAAAAGGCTAAATCCTTGGAGTCCACGTTCTACAGATGTGGAACAAGCAGGGGGAGGTCAGAGCTAG 801 0.4582 MNDSSAASDKLGESPAVELTGKIMVVAIIILFMVVVSVLSFHLYTRWFRSRSRRFVFTSGQGGAIRAGLDPSLLRSLPVLVFQPQDFKDGLECAVCLSELVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRTLVASENNESSVAENSADVSGSQESPTFPTNVLIWGNQTQISSTGASLEESTSQQPCGNSDRRHGMLVIDIPSEITSSSLSPSTSRFAEDELKSPITGRLRSLKRLLSGDKRLNPWSPRSTDVEQAGGGQS* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04349 266 CDD RING-H2_EL5-like 92 135 - -
Rops8g04349 266 SUPERFAMILY RING/U-box 73 140 - -
Rops8g04349 266 MobiDBLite consensus disorder prediction 242 266 - -
Rops8g04349 266 MobiDBLite consensus disorder prediction 209 225 - -
Rops8g04349 266 FunFam RING-H2 finger protein ATL3 61 140 - -
Rops8g04349 266 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 227 - -
Rops8g04349 266 MobiDBLite consensus disorder prediction 249 266 - -
Rops8g04349 266 Pfam Ring finger domain 92 135 IPR001841 -
Rops8g04349 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 140 IPR013083 -
Rops8g04349 266 MobiDBLite consensus disorder prediction 179 198 - -
Rops8g04349 266 SMART ring_2 93 134 IPR001841 -
Rops8g04349 266 MobiDBLite consensus disorder prediction 179 195 - -
Rops8g04349 266 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Rops8g04349 266 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04349 Rops-Chr8 86579133 86580474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04349 18 249 C3H Transcription Factor Family AT1G53820 40.878 1.24e-57 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04349 - - lja:Lj1g3v5062680.1 308.531