Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04341 ATGATGAGCGGCAACAACGTAGGAGGACAGTTTGGGGACACAACGCAGACCAAAGTGTTTGTGGGAGGACTAGCCTGGGAGACTCCGAAAGAGGCGTTGAGAGAGCACTTTGAAAAGTACGGTGAGATTCTTGAAGCCGTCATCATTTCCGATAAGCTCACCGGCAGATCCAAAGGCTACGGCTTTGTAACATTCAAGGAAGCAGAGGCAGCCAAAAAGGCTTGTGAGGACCCAACTATCATCATCAATGGTCGCAGAGCCAACTGCAATCTGGCATCGCTGGGTGCACGCCGTCCAAGGTCTTCTTCCACCCCTTCCCTTCCTCCTCCTCTTCCTCTTCCTCTTCCTCCACCACCCACACAAGGAACGAGGAATGACAACCAGGTTCAGTGGTATTATCCCCTGGGAACACCTCCACCTCCTTCCCCATTTCATCATTCGTTCTACGGGTACACACCCACTTACATTGCAACAGACATAAATTACAATTACAATCAGAAGCTGAACTACGGAAGCTGTGGGGGCTACATGAATGGGCAGGCTATTGTGGGTGCGAATACATTGATGCCAATGTACCCTGTGTACCACTTCCACCGAACCGAGACAATGGGTGTACCTGCCCATAACTTCCACCCAACCATGCCCCCACATCTTGCCCCATCTATCACTCCTACTACAGGTGCAGTTGGCACGGGTGAATGCTTCAAAAGGGTGGTGTGA 720 0.5125 MMSGNNVGGQFGDTTQTKVFVGGLAWETPKEALREHFEKYGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEDPTIIINGRRANCNLASLGARRPRSSSTPSLPPPLPLPLPPPPTQGTRNDNQVQWYYPLGTPPPPSPFHHSFYGYTPTYIATDINYNYNQKLNYGSCGGYMNGQAIVGANTLMPMYPVYHFHRTETMGVPAHNFHPTMPPHLAPSITPTTGAVGTGECFKRVV* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04341 239 PANTHER BOULE-RELATED 9 210 - -
Rops8g04341 239 SMART rrm1_1 18 90 IPR000504 GO:0003723
Rops8g04341 239 SUPERFAMILY RNA-binding domain, RBD 16 104 IPR035979 GO:0003676
Rops8g04341 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Rops8g04341 239 FunFam Putative RNA-binding protein ARP1 11 100 - -
Rops8g04341 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
Rops8g04341 239 MobiDBLite consensus disorder prediction 103 121 - -
Rops8g04341 239 MobiDBLite consensus disorder prediction 94 125 - -
Rops8g04341 239 Gene3D - 5 105 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04341 Rops-Chr8 86498526 86500782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04341 13 180 C2H2 Transcription Factor Family AT2G19380 32.258 7.44e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04341 - - cave:132187501 283.493