Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04339 ATGACACGGGGAACTCTCAATCGCAGACTAAGACCAAGAAAATTGATAGTACCATCAACATCAAGGGGACCTTGTTGTTCCATGTTCATGGTCTTTGTGTTGGTTCAGTCTTGGTTGCTCGTTCTTGTTGAAGCCTCCTCTTGTAACCAATTGGATAGAGACTCGCTCTTGGCCTTCTCCAGGAACATATCCACTCACCCTCCTCTCAATTGGACTGATGCTGTTGATTGCCGCCTTTGGGAAGGCATTGTTTGTGATGAGGACCAACAGAATGGGGATCTCAGAGTCACTCAACTATTGCTACCATCCAGAGGTCTCACTGGCTTCATCTTTCCTTCTCTCACAAACCTTACTGCTCTCACTCGCCTCAATCTCTCCCATAATAGATTATCTGGTAATCTCCCTGATCAATTTTTCTCGCTTCTTAACCACCTGCTGATTCTTGATTTAAGCTACAATCGTCTCTCTGGTGAATTGCCACTCTTTGTTGCTAATAACAGTAGCAGCAATAGGACTAGTATTATCCGGGTCCAGGAGCTGGATTTTTCTAGTAATTTATTCAATGGAACACTTCCACCTTCTCTCCTTCAGCACCTGGCAGCTGCAGCCACAGGAGGGAGTTTGATATCTTTTAATGTTGGTAACAATAGCTTCACTGGTCAAATTCCCACTTCTCTCCTCTGCAGTAATGGCAATAACTCGTCCTCTCTCAGATTCTTGGATTATTCCTCCAACCATTTCCATGGCATCATTCAGCCTGGACTAGGAGCATGTTCCAAGCTGGAGAAATTTCGAGCAGGCTTCAATTCACTGTCCGGGCCTCTTCCCAGTGATATTTTTAATGCTGTTGCTCTCACAGAAATCTCCTTGCCCCTCAATAAACTCAATGGAACCATTGGTGATGGTATTGCTAACCTTACCAACCTCACAGTTTTGGAGCTCTACTCCAATAATTTTATAGGCCCCATTCCCCCAGGTATTGGTGAGCTCTCCAAATTGGAACGGCTACTCCTTCGTAGCAACAGTCTAACTCGTACTCTGCCACCATCTCTGATGAACTGTGTCAATCTTGTCGTGTTGGATTTAAGGATCAACTCCTTGGAGGGAAATCTCGCAGCATTCAATTTCTCTGGACTCATCAGACTCACTACACTTGACCTTGGAAACAATAGCTTTACTGGTATTCTACCACCAACCCTTTATGCGTGTAAGTCACTTAAATCAGTAAGGCTAGCATCTAATCAGCTTGAGGGACAGATCTCACCTGATATACTTGGACTTCAGTCTCTGGCTTTCCTATCTGTTTCTACCAACAAACTGAGCAACGTCACAGGGGCTCTGAGGATACTGATGGGGCTCAAGAACCTTAGTACTCTTATGCTCTCCCAGAATTTTTTCGGTGAAATGATGCCAAATGATGCAAACATAATAGACCCAGATGGATTCCAAAAGATCCAAGTTCTAGGCTTGGGTGGTTGTAATTTCACAGGCCAAATACCTGGCTGGCTGGTTAATCTGAAGAAACTCGAGGCCTTGGATCTGTCCTATAATCAAATTAGCGGTTCAATTCCTCCTTGGTTGGGCTCATTTCCTCAGCTTTTCTACATAGACTTGTCTGTTAACCTTCTTACAGGAAAATTTCCTACGGAGCTCACAAGGCTTCCAGCACTAACATCTCAGCAGGCATATGATAAAGTAGAAAGGACTTACCTGGAGTTACCCCTCTTTGCTAATGCCAACAATGTTTCTCAGCTGCAATATTATCAGCTCTCCAACCTACCACCAGCAATATATCTAGGAAATAATAGCCTCAATGGCAGTATTCCCACAGAGATTGGCCTACTGAAAGCCCTTCATCAGCTGGACTTTAGTTTTAACAAATTCTCTGGCAATATCCCAGTTCAAATTTCTAACTTGACTAACTTAGAGAAACTATACCTCCAAGGAAACCGACTATCTGGTGAAATTCCTGTTTCACTCAAGAATTTGCATTTTCTGTCTGTTTTCAATGTAGCATACAATGATCTTCATGGACAGATACCAACTGGTAGTCAATTTGATACTTTCCCTAACTCCAGCTTTGAAGGAAACCCTCATTTGTGTGGTTCAGTTGTTCAGCACTCTTGTCTTCCTCAACAAGGTAGTACTGCAGGTGGTCACAGTTCAAACAAAAAACTAATAACTGGATTTGTAATTGCAGCCTGTTTTGGCACTGTTTCCTTCATTTCAGTGTTGGTAGTGTGGATACTATCCAAGAGGAGGATCAATCCAGGAGGAGACTCTGACAAGATTGAACTAGAATCAATTTCTGCCAACTCTAACTCTGGGATTCATCCTGACGTTGACAAGGAGACTAGCCTAGTGTTATTGTTCCCTAATAAAACAAATGAAATCAAGGATCTTACCATACTTGACATATTAAAAGCCACCGAAAATTTCAGTGAGGAAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACATTAGCAGATGGAACTACTCTAGCCATCAAGAAACTTTCAGGAGATATGGGTCTTATGGAAAGGGAATTTAAAGCAGAAGTAGAGGCTTTGTCGACAGCGCAGCATGAGAATCTGGTTGCATTGCAAGGCTATTGTGTGCATGGGGGCCTTCGGCTTCTCATATATAGTTACATGGAAAATGGAAGTCTGGATTACTGGTTGCATGAAAATGCTGATGGTCCATCTCAACTTGATTGGCCTACTCGACTGAAGATTGCTCAAGGTGCAAGTCGTGGAGTGGCTTACATGCATCAGATATGTGAACCACACATAGTGCATCGTGATATAAAGTCAAGCAATATACTCCTTGATGAAAAGTTTGATGCACACGTTGCAGATTTTGGGTTGGCCAGATTGATTCTTCCTTATCATACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATTCCCCCGGAGTATGGACAAGCATGGGTGGCGACTCTGAGAGGAGATATTTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTTACTGGAAGAAGGCCTGTCGATGTATCCAAGCCAAAAATGTCGGGGGAGTTAGTTGCCTGGGTTCAACAAATGAGGAGTGAAGGGAAACAAGATCAAGTCTTTGATCCTCTTCTGAAAGGGAAGGGCTTTGAAGAAGAGATGCTGCAAGTACTTGATATGGCCTGCATGTGTGTCAACCAGAATCCTTTTAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTGAAGAATGTAGGATCATTGAACCAACAAATGAATAAAGACTAG 3294 0.4293 MTRGTLNRRLRPRKLIVPSTSRGPCCSMFMVFVLVQSWLLVLVEASSCNQLDRDSLLAFSRNISTHPPLNWTDAVDCRLWEGIVCDEDQQNGDLRVTQLLLPSRGLTGFIFPSLTNLTALTRLNLSHNRLSGNLPDQFFSLLNHLLILDLSYNRLSGELPLFVANNSSSNRTSIIRVQELDFSSNLFNGTLPPSLLQHLAAAATGGSLISFNVGNNSFTGQIPTSLLCSNGNNSSSLRFLDYSSNHFHGIIQPGLGACSKLEKFRAGFNSLSGPLPSDIFNAVALTEISLPLNKLNGTIGDGIANLTNLTVLELYSNNFIGPIPPGIGELSKLERLLLRSNSLTRTLPPSLMNCVNLVVLDLRINSLEGNLAAFNFSGLIRLTTLDLGNNSFTGILPPTLYACKSLKSVRLASNQLEGQISPDILGLQSLAFLSVSTNKLSNVTGALRILMGLKNLSTLMLSQNFFGEMMPNDANIIDPDGFQKIQVLGLGGCNFTGQIPGWLVNLKKLEALDLSYNQISGSIPPWLGSFPQLFYIDLSVNLLTGKFPTELTRLPALTSQQAYDKVERTYLELPLFANANNVSQLQYYQLSNLPPAIYLGNNSLNGSIPTEIGLLKALHQLDFSFNKFSGNIPVQISNLTNLEKLYLQGNRLSGEIPVSLKNLHFLSVFNVAYNDLHGQIPTGSQFDTFPNSSFEGNPHLCGSVVQHSCLPQQGSTAGGHSSNKKLITGFVIAACFGTVSFISVLVVWILSKRRINPGGDSDKIELESISANSNSGIHPDVDKETSLVLLFPNKTNEIKDLTILDILKATENFSEENIIGCGGFGLVYKATLADGTTLAIKKLSGDMGLMEREFKAEVEALSTAQHENLVALQGYCVHGGLRLLIYSYMENGSLDYWLHENADGPSQLDWPTRLKIAQGASRGVAYMHQICEPHIVHRDIKSSNILLDEKFDAHVADFGLARLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDIYSFGVVMLELLTGRRPVDVSKPKMSGELVAWVQQMRSEGKQDQVFDPLLKGKGFEEEMLQVLDMACMCVNQNPFKRPSIREVVEWLKNVGSLNQQMNKD* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04339 1097 FunFam Leucine-rich repeat receptor-like kinase 54 174 - -
Rops8g04339 1097 FunFam Leucine-rich repeat receptor-like protein kinase 889 1095 - -
Rops8g04339 1097 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 276 371 - -
Rops8g04339 1097 Gene3D Phosphorylase Kinase; domain 1 780 888 - -
Rops8g04339 1097 ProSiteProfiles Protein kinase domain profile. 813 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04339 1097 SUPERFAMILY L domain-like 239 698 - -
Rops8g04339 1097 Gene3D Ribonuclease Inhibitor 49 201 IPR032675 -
Rops8g04339 1097 FunFam Tyrosine-sulfated glycopeptide receptor 1 376 714 - -
Rops8g04339 1097 Gene3D Ribonuclease Inhibitor 376 716 IPR032675 -
Rops8g04339 1097 Gene3D Transferase(Phosphotransferase) domain 1 889 1097 - -
Rops8g04339 1097 Pfam Protein kinase domain 814 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04339 1097 SMART serkin_6 813 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04339 1097 SMART LRR_typ_2 379 403 IPR003591 -
Rops8g04339 1097 SMART LRR_typ_2 330 354 IPR003591 -
Rops8g04339 1097 SMART LRR_typ_2 427 449 IPR003591 -
Rops8g04339 1097 SMART LRR_typ_2 174 198 IPR003591 -
Rops8g04339 1097 SMART LRR_typ_2 506 530 IPR003591 -
Rops8g04339 1097 SMART LRR_typ_2 639 662 IPR003591 -
Rops8g04339 1097 SMART LRR_typ_2 117 141 IPR003591 -
Rops8g04339 1097 SMART LRR_typ_2 453 484 IPR003591 -
Rops8g04339 1097 SMART LRR_typ_2 142 166 IPR003591 -
Rops8g04339 1097 ProSitePatterns Serine/Threonine protein kinases active-site signature. 935 947 IPR008271 GO:0004672|GO:0006468
Rops8g04339 1097 PRINTS Leucine-rich repeat signature 145 158 - -
Rops8g04339 1097 PRINTS Leucine-rich repeat signature 506 519 - -
Rops8g04339 1097 Pfam Leucine rich repeat 356 416 IPR001611 GO:0005515
Rops8g04339 1097 Pfam Leucine rich repeat 484 543 IPR001611 GO:0005515
Rops8g04339 1097 ProSitePatterns Protein kinases ATP-binding region signature. 819 842 IPR017441 GO:0005524
Rops8g04339 1097 SUPERFAMILY Protein kinase-like (PK-like) 798 1084 IPR011009 -
Rops8g04339 1097 Gene3D Ribonuclease Inhibitor 202 279 IPR032675 -
Rops8g04339 1097 ProSiteProfiles Leucine-rich repeat profile. 508 530 IPR001611 GO:0005515
Rops8g04339 1097 Gene3D Ribonuclease Inhibitor 280 375 IPR032675 -
Rops8g04339 1097 FunFam Leucine-rich repeat receptor protein kinase MSP1 781 888 - -
Rops8g04339 1097 Pfam Leucine Rich Repeat 641 663 IPR001611 GO:0005515
Rops8g04339 1097 SUPERFAMILY L domain-like 53 324 - -
Rops8g04339 1097 PANTHER LEUCINE RICH REPEAT KINASE 2 96 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04339 Rops-Chr8 86472002 86475921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04339 9 753 Miscellaneous Gene Families AT1G17250 48.353 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Rops8g04339 Pkinase 6.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04339 - - ccaj:109797788 1729.53