Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04329 ATGGGGGAAACAGTGCCTGTGGGATATAGATTTCATCCAACCGATGAAGAGCTCGTGGGTCACTACCTGAAGTATAAACTGCTGGGTGATGATTCCAGAGTGCAGAATATGATTGCCCAGGTTGATGTTTGCAAGTTTGAGCCTTGGGACTTACCAGCATTTTCCAAGGTAAAATCGGATGACCATGAGTGGTTTTTCTTCAGTCCTCGTGATTTGAAATACACAAATAGTATCAGGTCTAACAGGACAACCAACGGTGGCTACTGGAAGGCTACTGGTAAAGACCGTAACATCAAGACACGAGGCACCGACAAAGTCATTGGCACCAAGAAGACTCTGGTTTTCCACATGGGTCGTGTTCCTCGTGGTGTCAAGACCAACTGGGTTATTCACGAATATCATGCAGTAACATTTCCTGATGACAAGAGAAATTTTGTCTTGTGTCGCTTGATGGAGAAAGCTGAGAAAAAAGCAGAAGTCAGAACTGATGTCCATGAAGGGGAGCCTATTGCTGCTGATCATGAAAACCAAGCAACAGCTGATATAATTCCAGATTTGTTTCAGGTATATACATCGCAAGAAGAGACTCTGGAATCAATCTTTCCGGCACCACCTCAGGCAGATGAATATGACTTCCCCTTCCTACAGCACTCTCCAATTGTCACTGATCCATTTCAGGATTTCATATTTACCAACAATATCAGTTTTGGGAATGAAAACAACATTGCACAGTTTCCATTGGATCCAACTGAAGATGAAGACAATGTGTTATTTTTGGATTCCATTTGGGATGATGAGGACGTTGTCATCAGTGAAGAACGAAGGAATGCTTTTGTTAATGATTCCACCCCCTCACAGTCATTAAGACAGGTGTATTATGAAAACAGTGAAACAGACGTCGAACTAGTCTCTGCACAGTATGGCAATGCTTCTGGCAATACATCTGCGTGTAAACAAGCTGCTTCAAGTGGATTCCAGGTAATGAAAATGGTCCATACACAAGATGATGTTTATGCTGGCCCTCTTTCATTGTCTTCTAAAACTGAAGTAAACCAAGAGAAAAAGAGCAGTACCTTTAGTGATAATTTCTGGGGAGTGGACACTTCTGATGATTCAACTGCAAGTAAACCTTTGTCTATGTCTGTTATCAAGAATATTAGCTCTCCTTCACCTCCAACAGCTAGCTCTTCATCAACTCCTAGAAGAAGCAAAACTAAATATCATCCAAGATCTCAAACACAAAGAAAGATTTCCAAAGCAGTATCCCAACATGAGGTGCAGAAGGAAAAACAGATAGTGGAGTCAAACAAAGATCAGAGAAAAGCTCAGGATGTCAGGTCAAGAAAGAATTTGGAAACTACAAGCAATCAATCATCCAGTATCAATGGAAAGGGTTCTTTCATCAACCTGCAGACACCTTCAATAAGTCAAAATCCAAATCCACGCTCTGTATATCTTGTCAATGTAATTATAGGATTTTCATTGCTGATAGTCACTGCTTGGGATATGGTATCATTTGGGAAGTTGTGCTAG 1533 0.4123 MGETVPVGYRFHPTDEELVGHYLKYKLLGDDSRVQNMIAQVDVCKFEPWDLPAFSKVKSDDHEWFFFSPRDLKYTNSIRSNRTTNGGYWKATGKDRNIKTRGTDKVIGTKKTLVFHMGRVPRGVKTNWVIHEYHAVTFPDDKRNFVLCRLMEKAEKKAEVRTDVHEGEPIAADHENQATADIIPDLFQVYTSQEETLESIFPAPPQADEYDFPFLQHSPIVTDPFQDFIFTNNISFGNENNIAQFPLDPTEDEDNVLFLDSIWDDEDVVISEERRNAFVNDSTPSQSLRQVYYENSETDVELVSAQYGNASGNTSACKQAASSGFQVMKMVHTQDDVYAGPLSLSSKTEVNQEKKSSTFSDNFWGVDTSDDSTASKPLSMSVIKNISSPSPPTASSSSTPRRSKTKYHPRSQTQRKISKAVSQHEVQKEKQIVESNKDQRKAQDVRSRKNLETTSNQSSSINGKGSFINLQTPSISQNPNPRSVYLVNVIIGFSLLIVTAWDMVSFGKLC* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04329 510 MobiDBLite consensus disorder prediction 352 465 - -
Rops8g04329 510 MobiDBLite consensus disorder prediction 449 465 - -
Rops8g04329 510 Pfam No apical meristem (NAM) protein 6 134 IPR003441 GO:0003677|GO:0006355
Rops8g04329 510 SUPERFAMILY NAC domain 4 152 IPR036093 GO:0003677|GO:0006355
Rops8g04329 510 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 396 - -
Rops8g04329 510 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Rops8g04329 510 MobiDBLite consensus disorder prediction 352 402 - -
Rops8g04329 510 ProSiteProfiles NAC domain profile. 5 153 IPR003441 GO:0003677|GO:0006355
Rops8g04329 510 MobiDBLite consensus disorder prediction 421 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04329 Rops-Chr8 86401893 86405935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04329 3 157 NAC Transcription Factor Family AT4G35580 55.625 7.11e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g04329 NAM 7.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04329 - - pcin:129287580 439.113