Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04328 ATGGAGTTGATGCAAGAAGAAGTTAAAGGGTATTCTGATAGCAGGGAAGAAGAGGAGGAAGAGGAAGCTGCAGAGATTTTCAGAATCAAAGGAGAAGAAAGCAGCAGGTTACACCAACAAGATGTGGCATCTTCCAAGTTGATCAATCACAGAAAGCAGCTAGATTTCATGGAGTTATCACTGGGGAGAAACAAGGAAGAGGAAGCCAATATGCTGCAACAAGGATCAGGAGTTGCTGCTTCTTCTTCGAATTCAAACACAAACACAAAGGAAACAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCAAGTGACGTAGGGAAGCTGAATCGACTGGTGATCCCAAAGCAGCATGCAGAGAAGTACTTCCCCCTTGACTCTTCATCCAACGAGAAAGGTCTGCTCCTCAATTTTGAGGACAGGAATGCGAAGCTATGGAGGTTCAGGTATTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGATGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCGGGTGACATAGTCTCCTTTCAGCGTGGCCTTGGTGAATTGTATAGACATAGGTTGTACATAGATTGGAGGAGAAGGCCTGAACATGTTTCTCATCCTTCAAATTCTCTCATCACACCCTTCTTTCTTCCCAGTCAATACTATCCTATCAGATGCCTCCCTCCCACTCCTCGCTACCATGATCATTTTCACCACCAAAACTACAACAATATCTATCCTTTTCATAACCATGGTGACCTGAATTCGGGATCTGGGTCACCTTATTATCTGAGGTCTCCAACCCCATCAATGTCAATGGGTCATCAAAACTTACCGGGGAAACAACAAGAGAGAGGGAATATTGCCCCCATGATCATTGATTCCGTGCCGGTTGCTCATCATCATCAACAACACCACCACCACCACCATAGTGACATCACTGGTGCTAGTACTACTACTGGTAAACGGCTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCACCGGCAGAAGAATCCTCCAAATGCTTGTCCTCCACTTCGGCAGCACGTCTCACAATGGCTGATTCACTTCCCTCTTCTTCTCTTCAACCTCATCAGCGCTTCAGGGTACCCCATGAACATCCACTTTCATCATCGGCAAGGTTTGGGGATCAGAGAGGGGGAACTTCAGCGCTGTTTGATTTGGATCCCTCTTTGTAA 1215 0.4609 MELMQEEVKGYSDSREEEEEEEAAEIFRIKGEESSRLHQQDVASSKLINHRKQLDFMELSLGRNKEEEANMLQQGSGVAASSSNSNTNTKETVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNAKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGELYRHRLYIDWRRRPEHVSHPSNSLITPFFLPSQYYPIRCLPPTPRYHDHFHHQNYNNIYPFHNHGDLNSGSGSPYYLRSPTPSMSMGHQNLPGKQQERGNIAPMIIDSVPVAHHHQQHHHHHHSDITGASTTTGKRLRLFGVNMECASSPAEESSKCLSSTSAARLTMADSLPSSSLQPHQRFRVPHEHPLSSSARFGDQRGGTSALFDLDPSL* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04328 404 Pfam B3 DNA binding domain 99 203 IPR003340 GO:0003677
Rops8g04328 404 MobiDBLite consensus disorder prediction 73 89 - -
Rops8g04328 404 Coils Coil 1 21 - -
Rops8g04328 404 MobiDBLite consensus disorder prediction 73 92 - -
Rops8g04328 404 SMART B3_2 99 204 IPR003340 GO:0003677
Rops8g04328 404 MobiDBLite consensus disorder prediction 377 404 - -
Rops8g04328 404 CDD B3_DNA 97 186 IPR003340 GO:0003677
Rops8g04328 404 MobiDBLite consensus disorder prediction 1 24 - -
Rops8g04328 404 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 346 IPR044800 GO:0003700
Rops8g04328 404 Gene3D - 92 212 IPR015300 -
Rops8g04328 404 FunFam B3 domain-containing protein 92 213 - -
Rops8g04328 404 ProSiteProfiles B3 DNA-binding domain profile. 99 204 IPR003340 GO:0003677
Rops8g04328 404 MobiDBLite consensus disorder prediction 302 321 - -
Rops8g04328 404 SUPERFAMILY DNA-binding pseudobarrel domain 96 201 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04328 Rops-Chr8 86387539 86389744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04328 58 339 RAV Transcription Factor Family AT2G46870 50.000 6.88e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g04328 B3 2.1e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04328 K09287 - gmx:100812161 435.261