Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04325 ATGGAGGATGTCAATAGGGTTCCTGGGGTGGGTAGTTCTTCCCCCTCTTACTGGCTGGATGCCTGTGAGGACATCTCATGCGATTTCATTGATTTTGATGTGTCGTCCATTGTCTCAGACCAGCCTGATAACACTTCCAATCAGGACTTTTTCGGTGGGATTGATCGAATCTTGGACAGCATCAAGAACGGTGGTGGACTCCCTCTTGATGTTGAATCCAATTCCAATTCCAATTCTAATGGTACTGCAGGAGGAGTAGCTTGCTCCCCTAATCATGCTTCTTCTGCACTTTCCAAGGTGCAGCACTCTGAAGAAGATGCTTTTCTGAAGAATGGATTGGTTGGGGAGAAACATGCTGATGCTTTTCAGCATTCAGGAGCTCATATTAATGGGTGTAGTAAGCTGTCAAATGGGAATGAAGCGGGAGTTTTGGTGAATTATTCTCAGGAGAATGGAGGTCTGACTCAGAATAGAGGCCATGATGTTGATGGTGAAGAAAGGTGCAGCAAAAAGGCTAGGCTTGGCAACTACAAGAATGAGAGGCCTTATTATGGGAGAGTGAAGGAAAGAGAGAGGGGTTTTAATAACAGGAAGAGGCCAAGGGATAGGGATGAGATTGATAGGAGGGATAAAGATAGTGTCAGGAAGAGAGAACATTATGGTACTACTTGTGGAAGGAGAGATGTTAGAGATAGGGATTGGAGGGATAGAGAGCAGAGGGGCTACTGGGAGAGGGATAAGTCAGGTTCCAATGATATGGTCTTTCGCTTGGGACCTTGGGAAGCTGATCGTAGTAGAGAAGAGAAAATTGCAAATGAGGCAAAACAGGAAAGCAATGGAAAGATTGATAAGAAATCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAAAAAGCAAGACAGTATCAGTTGGATGTTCTTGAGCAGGCAAAGAAGAAAAATACTATTGCTTTTCTTGAAACTGGAGCAGGGAAAACCCTGATTGCTGTACTTCTCATGAAAAGTATACATGAGAGTTTACAAAAGCAAAATAAAAAAATGCTTGCAGTATTCTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGGACCGGGTATCAAGTGGGACACTATTGCGGAGAAATGGGACAGGATTTCTGGGATGCTCGAAGGTGGCAGCGCGAATTTGACACTAAACATGTTTTAGTCATGACTGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCCTGATTCTGGATGAGTGCCATCATGCTGTGAAGAAACATCCATATTCGCTGGTGATGTCTGAGTTCTACCATACGACACCCAAAGAAAAGAGACCATCTGTGTTTGGAATGACTGCTTCTCCTGTTAACTTGAAAGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGCACCATTAAAGATCGTAAAGAGCTGGAGAAACATGTGCCGATGCCCTCTGAAATTGTGGTGGAGTATGATAAAGCAGCCAGTTTATGTTACCTGCACGAGCAGATAAAGCAGATGGAGGTTGAAGTCGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCAGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTTGGTGAACTGGGACAGTGGTGTGCATATAAGGTTGCACAATCTTTTCTAGCAGCTTTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTCTCCCTTCTGAAATGTCAACTGTCAGAGGGTGCCGTTTCTGACAAAAATGTCGGAGTTGATGAGTCAGTGTGTGGTGCAGCTCACAGTGGGTCTGAACATGAAGAGATTGAAGAAGGAGAGCTTCCAGACAGTCACGTTGTATCTGGCGGGGAACATGTGGATGTCATAATTGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCACTAATCAAAATACTTCTCAAGTATCAACACACAGAAGATTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCGTTAGTTCTACCCAAGGTCTTTACAGAGCTTCCATCTCTTAGTTTTGTGAACTGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCCACCAAATGCAGGATACAATTTCTAAGTTCCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAAACCGTTTTGGCATACATTCAGTCTAGGGGCCGTGCTCGAAAGCCTGGGTCTGATTACATCCTGATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAAGAAACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGATACCCGGCCGGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTCGTAAGCTTAAATTCTGCTGTGGGTCTCATCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAGGCATGAAAAACCTGGATGTCCTACTGAATATTCCTGCAAGCTTCAACTGCCATGTAACGCACCATTTGAAAATCTGGAGGGTCCTATCTGCAGTTCAATGCGCCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAAAAACTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTGGGGGAGAAAGAGAAAAGGCTGAGCAAAATGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGGGAGTTCTACCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAACAACTCCAAATTGCTTCATCTTTTTATGTATGCCATGAAGTGTGAAAATGAAGGCCATTCAAAGGATCCATTCTTGACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCGATGGATCTATTTATCGCTCGAACCGTGACTACAAAGGCATCTCTTGTCTTTAGAGGGTTGATAGATATCACTGAGAGTCAGTTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTTGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTTGGCGATAAGTCTTTAGATCCGACGAACCAAGTTGACTGGCATCTGGTTGAGACAATAATTGGAGCTGGTGCATGGAAAAATCCCCTGCAGAGGGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACATTAGGTGGAGACCGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAGTCACATCCAACCTATGGAATCAGAGGAGCTGTTGCCCAGTTTGATGTGGTGAAAGCTTCAGGATTGGTTCCTAACAGAGATGCCATGCAAACACAAAGGCAAATCAATATGACTACCAAAGGAAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTAGGGAAAATTGTAACTGCTGCTCACTCGGGGAAGAGGTTTTATGTTGATTCAATACGCTATGATATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGTTCATATGCTGATTACTACAAGCAAAAGTATGGGGTTGATTTGATTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTCTGTCCCCTCGATTTGAACACAGTGAAGCACATGAAGGTGAATTTGAAGAGGCTCATGACAAAACTTACTATGTTTTCCTTCCTCCGGAGCTATGCCTAGTACACCCACTACCTGGATCACTTGTTCGTGGTGCTCAGAGGTTGCCGTCAATAATGAGGAGGGTTGAAAGTATGCTACTTGCAATTCAGCTTAAGAATATGATAAATTATCCTGTCCAGGCTTTAAAGATCTTGGAAGCCTTGACTGCTGCCTCTTGCCAGGAGACTTTCTGTTATGAAAGGGCAGAGCTTCTAGGAGATGCTTACCTGAAATGGGTTGTTAGTCGATTTCTGTTCCTAAAATACCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAGAGGGTCAGTAACATGGTATTATATCAGTATGCATTGAGTAAAGGGCTTCAATCATACATTCAAGCAGATCGCTTTGCCCCATCCAGATGGGCAGCTCCTGGAGTGCTGCCTGTCTTTGATGAGGATACGAAGGATGGGGAGTCATCTTTATTTGACCAGGAGCGATCCATTTCTAAGACTGAGATGATGGACAACACTGCTGGATTTGAGGATGAAATGGAAGACGGTGAGCTTGAGAGTGATTCGAGTTCTTACAGAGTTCTGTCCAGCAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGGGTATATTATGTCCAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGTATTGATATAGAGTTTGATCCTGATGAAATGGAGTGTACAAGAAAGCCATTCAATGTTCCAGACAGCATACTTAGGAGTGTCGATTTTGATGCCTTAGAAGGTGCTTTAAATATGAAGTTTAAAGACGGGGGGCTGCTGGTAGAATCCATAACTCATGCCTCCAGACCATCTTCAGGAGTATCCTGCTATCAGCGGTTGGAGTTTGTTGGTGATGCTGTCTTGGACCATCTTATAACCAGGCACTTGTTTTTCACTTACACAAATCTGCCACCAGGACGTTTGACCGACCTTCGGGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTGCAGTTAAACACAATCTTCACATACATCTCCGACATGGGTCCAGTGCCCTCGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTCAAAACCAGGATTTAACTCATTTGGTCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCCGGTGCCATTTTTCTTGACAGTGGGAGGGATACTGCTGTTGTTTGGAAGGTTTTTCAGCCTCTTCTGCATCCTATGGTTACACCAGAGACTTTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCAGAAGGCTTAGAGTATAGAGCAAGTCGTATTGGCAATTTGGCCACTGTTGAAGTATTCATTGATGGAGTACAAGTAGGTGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAAGTGGGAAAAGCTCAGGAGAAGAATGAAGAAAATGGGAAAAAGAATGGAAACCAGACATTTACTAGACAAACATTAAATGATATTTGTTTGCGAAGAAATTGGCCTATGCCATTCTACCGGTGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCAGTACGCGTCAATACTACTGACAGAGGATGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAACTACTAAACAAATTATACTCATGA 5871 0.4374 MEDVNRVPGVGSSSPSYWLDACEDISCDFIDFDVSSIVSDQPDNTSNQDFFGGIDRILDSIKNGGGLPLDVESNSNSNSNGTAGGVACSPNHASSALSKVQHSEEDAFLKNGLVGEKHADAFQHSGAHINGCSKLSNGNEAGVLVNYSQENGGLTQNRGHDVDGEERCSKKARLGNYKNERPYYGRVKERERGFNNRKRPRDRDEIDRRDKDSVRKREHYGTTCGRRDVRDRDWRDREQRGYWERDKSGSNDMVFRLGPWEADRSREEKIANEAKQESNGKIDKKSEEAKERVPEEKARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLMKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNVGVDESVCGAAHSGSEHEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFTELPSLSFVNCASLIGHNNSQEMRTHQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGCPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKAEQNDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACNNSKLLHLFMYAMKCENEGHSKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFRGLIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSLDPTNQVDWHLVETIIGAGAWKNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDAMQTQRQINMTTKGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGEFEEAHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKNMINYPVQALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQRVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKTEMMDNTAGFEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVQGGKNAANHLMKWIGIDIEFDPDEMECTRKPFNVPDSILRSVDFDALEGALNMKFKDGGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHIHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGKAQEKNEENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS* 1957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04325 1956 Pfam Dicer dimerisation domain 893 981 - -
Rops8g04325 1956 SUPERFAMILY RNase III domain-like 1618 1788 IPR036389 GO:0004525|GO:0006396
Rops8g04325 1956 FunFam Endoribonuclease dicer-like 1 888 989 - -
Rops8g04325 1956 PANTHER DICER-RELATED 1242 1858 - -
Rops8g04325 1956 Gene3D Dicer dimerisation domain 888 989 IPR038248 -
Rops8g04325 1956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 832 IPR027417 -
Rops8g04325 1956 SMART riboneu5 1415 1598 IPR000999 GO:0004525|GO:0006396
Rops8g04325 1956 SMART riboneu5 1634 1790 IPR000999 GO:0004525|GO:0006396
Rops8g04325 1956 FunFam endoribonuclease Dicer homolog 1 1884 1953 - -
Rops8g04325 1956 CDD RIBOc 1635 1790 IPR000999 GO:0004525|GO:0006396
Rops8g04325 1956 MobiDBLite consensus disorder prediction 979 1005 - -
Rops8g04325 1956 FunFam Endoribonuclease dicer-like 1 692 854 - -
Rops8g04325 1956 CDD DEXHc_dicer 297 496 - -
Rops8g04325 1956 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1793 1856 IPR014720 -
Rops8g04325 1956 ProSitePatterns Ribonuclease III family signature. 1654 1662 IPR000999 GO:0004525|GO:0006396
Rops8g04325 1956 CDD PAZ_CAF_like 1229 1378 - -
Rops8g04325 1956 SMART ultradead3 294 497 IPR014001 -
Rops8g04325 1956 Pfam Helicase conserved C-terminal domain 701 818 IPR001650 -
Rops8g04325 1956 SUPERFAMILY RNase III domain-like 1392 1596 IPR036389 GO:0004525|GO:0006396
Rops8g04325 1956 Pfam PAZ domain 1255 1396 IPR003100 GO:0005515
Rops8g04325 1956 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 705 865 IPR001650 -
Rops8g04325 1956 FunFam Endoribonuclease dicer-like protein 1398 1590 - -
Rops8g04325 1956 Gene3D - 1884 1954 - -
Rops8g04325 1956 Gene3D - 1791 1869 - -
Rops8g04325 1956 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 482 IPR014001 -
Rops8g04325 1956 MobiDBLite consensus disorder prediction 982 1005 - -
Rops8g04325 1956 Gene3D - 691 857 IPR027417 -
Rops8g04325 1956 MobiDBLite consensus disorder prediction 266 294 - -
Rops8g04325 1956 CDD SF2_C_dicer 698 828 - -
Rops8g04325 1956 CDD RIBOc 1417 1596 IPR000999 GO:0004525|GO:0006396
Rops8g04325 1956 SMART PAZ_2_a_3 1236 1400 IPR003100 GO:0005515
Rops8g04325 1956 SMART helicmild6 731 820 IPR001650 -
Rops8g04325 1956 Pfam Ribonuclease III domain 1433 1578 IPR000999 GO:0004525|GO:0006396
Rops8g04325 1956 Pfam Ribonuclease III domain 1654 1767 IPR000999 GO:0004525|GO:0006396
Rops8g04325 1956 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1878 1951 - -
Rops8g04325 1956 MobiDBLite consensus disorder prediction 159 221 - -
Rops8g04325 1956 Pfam Type III restriction enzyme, res subunit 304 464 IPR006935 GO:0003677|GO:0005524|GO:0016787
Rops8g04325 1956 Gene3D - 292 536 IPR027417 -
Rops8g04325 1956 SUPERFAMILY PAZ domain 1252 1376 IPR036085 GO:0005515
Rops8g04325 1956 FunFam Endoribonuclease dicer-like protein 293 533 - -
Rops8g04325 1956 SUPERFAMILY dsRNA-binding domain-like 1882 1952 - -
Rops8g04325 1956 FunFam Endoribonuclease Dicer 1 1256 1374 - -
Rops8g04325 1956 CDD DSRM_DCL_plant 1884 1945 - -
Rops8g04325 1956 SUPERFAMILY dsRNA-binding domain-like 1749 1875 - -
Rops8g04325 1956 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1878 1953 IPR014720 -
Rops8g04325 1956 ProSiteProfiles PAZ domain profile. 1236 1376 IPR003100 GO:0005515
Rops8g04325 1956 MobiDBLite consensus disorder prediction 154 221 - -
Rops8g04325 1956 SMART DRBM_3 1794 1855 IPR014720 -
Rops8g04325 1956 SMART DRBM_3 1879 1952 IPR014720 -
Rops8g04325 1956 Gene3D Ribonuclease III domain 1615 1788 IPR036389 GO:0004525|GO:0006396
Rops8g04325 1956 Gene3D Ribonuclease III domain 1399 1590 IPR036389 GO:0004525|GO:0006396
Rops8g04325 1956 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 893 988 IPR005034 GO:0016891
Rops8g04325 1956 ProSiteProfiles Ribonuclease III family domain profile. 1619 1767 IPR000999 GO:0004525|GO:0006396
Rops8g04325 1956 Gene3D paz domain 1252 1374 - -
Rops8g04325 1956 FunFam Endoribonuclease dicer-like 1 1614 1788 - -
Rops8g04325 1956 MobiDBLite consensus disorder prediction 1858 1877 - -
Rops8g04325 1956 ProSiteProfiles Ribonuclease III family domain profile. 1419 1578 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04325 Rops-Chr8 86304502 86319599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04325 717 860 Eukaryotic Initiation Factors Gene Family AT5G11200 29.452 1.39e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04325 K11592 - gmx:100811631 3437.89