Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04324 ATGGATGCATACTCCTCTGGAGAAGAAATGGCTGTTAAGACAAGAAAACCATATACAATCACAAAGCAAAGGGAACGATGGACAGAGGAGGAACATAACAGATTTCTGGAAGCCCTGAAGCTATACGGGCGAGCATGGCAGCGAATAGAAGAGCATATAGGAACAAAGACTGCTGTGCAAATCAGGAGCCATGCACAAAAATTCTTTTCAAAGTTGGAGAAAGAGGCTCTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGACATAGACATCCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCTTATCCCCGTAAGACCAATGTTGGTGCCCCAACATTACATGGTGGAGCAAAGCATGGAAATGGGGCAACATTACACAGTGGAGCAAAGCATGGAAAGCCTCTCATTTCTGTTGCATCTTCACATGGGAAACAAGCACTGGACTTTGAGAAAGAACCACTTCCAGAGAAGCATATTGTTGACGAAGGGCCAACAACTGCAAAAGAAAATAAGGATGAAAACTGCTCAAAAGTATTTCCAGTCCTCCAGGAGGCACCTTGTTCATCTGTATCATCGGCAAACAAGAATTCAATATCAATGTCAGTGCCACAGAGAAATTCATGTGCCTTAAGGGAGTTTATACCTTTAGTGAAAGAGGTAATAACTCAAGATGAAACAAATGAATCTTTTATCACTACTGAGATTGAAAATCTGAAGTTGGAGATTGATGATGGCAAACACACACAAAAGACTAATGGCACTTGTAAAGCCTCTAAGTTGGAGAATTCTGGTTCTCCCAAATTGGTTCAAACTGAGAAAACAGATGGTCTTACTTGTGCATTAACAACAGATGAGATGCAAGGCAATCAGAATTACCCAAGACATATCACTGTGCATGTTGTTGATGGGAACCTTGGAACCAGTACGCAAAATCCATCCCAAGATATGTTGATTCAAGACTCTATATTTCAGCCAATAGGAGGGGTTACTGGGCAACCTAATCTTTTCACCAATCCAGCTGCATCAAACACAAGTGAAAGTCAAAATAACTCAGCACGATCCTCTGTTCATCAATCATTTCCTCCTTGTCCTCCCTTCACACAACATAATCAGGATGATTACCAATCATTTCTCCACATGTCCTCCACTTTTTCAAGTCTTATTGTCTCTACCTTGCTGCAAAACCCTGCAGCCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGCAGAAACTTTAGCAGATTCTCCCTCATGCTCTCAAGGAGGTTTTCCGTCTAGACAAATTGGTTCACCTCCAAGTGTGGCAGCTATTGCAGCTGCTACAGTCTCTGCTGCAACTGCATGGTGGGCAGCCCATGGACTGCTTCCTTTGTGTGCTCCCCTCCATACTGCTTTTGCCTGTTCTCCTGCATCAGCAACTGCAGTTCCATCAATGAATATTGGTGAAGTGCCACCAAAGATAGCACAAGGAGAGATTACACTACAAGATCCTCCTATGCAAGATCAGATACTGGATCCAGAATCCTCGGAAGCTCTGCAAGCTCAACATTCAGCTTCTAAGTCACCAGCTGTTTCTTCATCTGAATCTGAGGAGAATGGAGATGCCAAGTTAAATACTTCATCAAAGGCTACAAATCATGAGATGAACCAAGCAATTTCTGAGAACCTTGATTCCGACAAAACAAAGGGAAGAAAACAGGTTGATCGTTCCTCATGTGGTTCCAACACTGCCTCTAGTAGTGAAGAGACCAATGTACTACTACCGAAGGATGAGAAAGAAAAGGAAGATTCCAAAACACCTGATGCAGACCATTTGGCTACTGAGCCTAGTAATCGTCGTAGTAGAAGCATTAGCATCCTTACTGATTCATGGAAGGAGGTCTCGGAAGAGGGACGACTTGCCTTTCAGGCTCTATTCTCCAGGGAGGTGTTGCCGCAAAGCTTTTCACCTCCTCATGATTTGACAAATAAGGATCATCAGATGGACAACATCAAGGATAACAAGCAAAACACAGACTACAAAGATCACCTTGACAGCAAGAAATGCAGTTCTAATTGTGATGGAACACAGAAAATCCCGCCATTTGTAAATAATAACAATGAGGAGGAGGGACTCGTAACCATAGGTCTTGGACAAGGAAAGCTCAAAACTCGTCCAACAGGGTTTAAACCTTACAAAAGATGTTTAGTAGAGGCCAAAGAAAACAGGATTGGAACCGTCTGCAACGAAGTTGAGGAGAAAGGTCCTAAGAGAATACGTTTGGAAGGGGAGACTTCAACTTGA 2304 0.431 MDAYSSGEEMAVKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTNVGAPTLHGGAKHGNGATLHSGAKHGKPLISVASSHGKQALDFEKEPLPEKHIVDEGPTTAKENKDENCSKVFPVLQEAPCSSVSSANKNSISMSVPQRNSCALREFIPLVKEVITQDETNESFITTEIENLKLEIDDGKHTQKTNGTCKASKLENSGSPKLVQTEKTDGLTCALTTDEMQGNQNYPRHITVHVVDGNLGTSTQNPSQDMLIQDSIFQPIGGVTGQPNLFTNPAASNTSESQNNSARSSVHQSFPPCPPFTQHNQDDYQSFLHMSSTFSSLIVSTLLQNPAAHAAASFAATFWPYANAETLADSPSCSQGGFPSRQIGSPPSVAAIAAATVSAATAWWAAHGLLPLCAPLHTAFACSPASATAVPSMNIGEVPPKIAQGEITLQDPPMQDQILDPESSEALQAQHSASKSPAVSSSESEENGDAKLNTSSKATNHEMNQAISENLDSDKTKGRKQVDRSSCGSNTASSSEETNVLLPKDEKEKEDSKTPDADHLATEPSNRRSRSISILTDSWKEVSEEGRLAFQALFSREVLPQSFSPPHDLTNKDHQMDNIKDNKQNTDYKDHLDSKKCSSNCDGTQKIPPFVNNNNEEEGLVTIGLGQGKLKTRPTGFKPYKRCLVEAKENRIGTVCNEVEEKGPKRIRLEGETST* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04324 767 MobiDBLite consensus disorder prediction 515 622 - -
Rops8g04324 767 SMART sant 23 71 IPR001005 -
Rops8g04324 767 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Rops8g04324 767 MobiDBLite consensus disorder prediction 250 269 - -
Rops8g04324 767 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Rops8g04324 767 MobiDBLite consensus disorder prediction 253 269 - -
Rops8g04324 767 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Rops8g04324 767 MobiDBLite consensus disorder prediction 575 591 - -
Rops8g04324 767 MobiDBLite consensus disorder prediction 515 563 - -
Rops8g04324 767 Gene3D - 26 73 - -
Rops8g04324 767 PANTHER SWI/SNF COMPLEX-RELATED 8 649 - -
Rops8g04324 767 MobiDBLite consensus disorder prediction 86 132 - -
Rops8g04324 767 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Rops8g04324 767 MobiDBLite consensus disorder prediction 662 683 - -
Rops8g04324 767 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Rops8g04324 767 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Rops8g04324 767 MobiDBLite consensus disorder prediction 335 367 - -
Rops8g04324 767 MobiDBLite consensus disorder prediction 592 617 - -
Rops8g04324 767 CDD SANT 26 69 IPR001005 -
Rops8g04324 767 MobiDBLite consensus disorder prediction 654 683 - -
Rops8g04324 767 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04324 Rops-Chr8 86288917 86301192 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops8g04324 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04324 K12133 - gmx:780540 1115.14