Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04319 ATGGCTCCTCCATCAGAATCTAACAAAACACTTACGAACGGGGAAGCAAATCATCTTAAACCAGAAGAAGAAGATGATGGGCTCGTGCTTGGCATGCAAATGATGGGTTCTTTTGTGGTTCCAATGGCTTTGCGGTCTGCAATTGAGCTGGGAGTCTTTGACATCTTAGCCAAAGCTGGTGAAGGTGCCAAGCTCTCTGCTGAAGATATTGCAGTTCAGATTGGTACCAACAACCCTGAAGCGCCCACAATGCTCGATCGTCTTCTTAGGCTGTTGGCTAGTCACTCTTTGCTACACTGCTCTGTTCCTCAACATCCACAAAGCCTTGGGTTGCCTCAGAGGTTCTACAGCCTCTCCCATGGCTCCAAATATTTTGTCACCGATGCTGATGGTGTGTCATTGGGACCCACTTTGGAATTGCTTGTGGATAACGTCTTCTACCAAAGCTGGTCCGAACTCAAAGGAGCGATCGTGGAAGGAGGTGTGCCATTCAACAGGGTTTATGGCATGCATGCCTTTGAATACCCAAGTGTAGATCCCAGGTTTAATGATGTTTTCAACAAAGCAATGGTCAATATCACCACAATAATTATGAAAAGAATTCTTGAATCCTACGAAGGTTTCGACTGCATCACTAAGCTGGTGGACGTAGGTGGTGGTCTTGGAATCAATCTCAAATTGATCACATCTAAATACCCTCATGTTCAGGGTATTAATTTTGACTTGCCTCATGTCATAAAACATGCCCCCATCTATGCAGGTGTGGAACATGTAGGAGGAGATATGTTTGAAAGCGTTCCTACAGGAGATGCAATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAACAATGTGTGAAGCTCTTGAAGAATTGTTACAAAGCTATTCCAAAGGATGGAAAGGTTATTGTTGTGGACTCAATTCTACCTATTGTACCTGAGGAAACAACTACAGCTAAGACTGCTTTCACATCTGACCTCTTAATGATGACTCAAAACCCAGGAGGGAAAGAGCGGACCCAACAAGAATTCATGGAATTAGTAAAAGGATCTGGATTTAGTGACATCAAATTTGTATGCTGTGTATCTGGTCTCTGGGTCGTGGAGCTCTTCAAGTAG 1122 0.4367 MAPPSESNKTLTNGEANHLKPEEEDDGLVLGMQMMGSFVVPMALRSAIELGVFDILAKAGEGAKLSAEDIAVQIGTNNPEAPTMLDRLLRLLASHSLLHCSVPQHPQSLGLPQRFYSLSHGSKYFVTDADGVSLGPTLELLVDNVFYQSWSELKGAIVEGGVPFNRVYGMHAFEYPSVDPRFNDVFNKAMVNITTIIMKRILESYEGFDCITKLVDVGGGLGINLKLITSKYPHVQGINFDLPHVIKHAPIYAGVEHVGGDMFESVPTGDAIFMKWILHDWSDEQCVKLLKNCYKAIPKDGKVIVVDSILPIVPEETTTAKTAFTSDLLMMTQNPGGKERTQQEFMELVKGSGFSDIKFVCCVSGLWVVELFK* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04319 373 Gene3D Vaccinia Virus protein VP39 126 373 IPR029063 -
Rops8g04319 373 MobiDBLite consensus disorder prediction 1 15 - -
Rops8g04319 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 370 IPR029063 -
Rops8g04319 373 MobiDBLite consensus disorder prediction 1 22 - -
Rops8g04319 373 PANTHER O-METHYLTRANSFERASE 34 354 IPR016461 GO:0008168
Rops8g04319 373 PIRSF O-mtase 9 373 IPR016461 GO:0008168
Rops8g04319 373 FunFam Caffeic acid 3-O-methyltransferase 11 125 - -
Rops8g04319 373 FunFam Caffeic acid O-methyltransferase 126 373 - -
Rops8g04319 373 Pfam O-methyltransferase domain 150 355 IPR001077 GO:0008171
Rops8g04319 373 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 373 IPR016461 GO:0008168
Rops8g04319 373 Gene3D - 9 125 IPR036388 -
Rops8g04319 373 Pfam Dimerisation domain 42 93 IPR012967 GO:0046983
Rops8g04319 373 SUPERFAMILY "Winged helix" DNA-binding domain 22 128 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04319 Rops-Chr8 86240010 86242015 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04319 24 373 Monolignol Biosynthesis Gene Families AT5G54160 53.429 2.34e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04319 K13066 - gmx:100789402 535.028