Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04318 ATGGCCCATTCATTAGAATCCAATGCAAAACCTGCCAACGGGGAAAGCAATAATCTTAAACCACGAGAAGAAGACGATGGTCTCGTGTTTGTCATGCAAATGAGGAGTTCTTTTGTGATTCCAATGGCTTTGCGGTCTGCAATTGAGCTGGGAGTCTTTGACATCTTAGCCAAAGCTGGTGAAGGTGCCAAGCTCTCTGCTGAAGATATTGCAGTTCAGATTGGTACCAACAACCCTGAAGCGCCCACAATGCTCGATCGTCTTCTTAGGCTGTTGGCTAGTCACTCTTTGCTACACTGCTCTGTTCCTCAACATCCACAAAGCCTTGGGTTGCCTCAGAGGTTCTACAGCCTCTCCCATAGCTCCAAATATTTTGTCACCGATGCTGATGGTGTGTCATTGGGACCCACATTGGAATTGCTTGTGGATAACGTATTCTACCAAAGCTGGTCCGAACTCAAAGGAGCGATCGTGGAAGGAGGTGTGCCATTCAACAGGGTTTATGGCATGCATGCCTTTGAATACCCAAGTGTAGATCCCAGGTTTAATGATGTTTTCAACAAAGCAATGGTCAATATCACCACAATAGTTATGAAAAGAATTCTTGAATCCTACGAAGGTTTCGACCGCATCACTAAGCTGGTGGACGTAGGTGGTGGTCTTGGAATCAATCTCAAATTGATCACATCTAAATACCCTCATGTTCAGGGTATTAATTTTGACTTGCCTCATGTCATAAAACATGCCCCCATCTATGCAGGTGTGGAACATGTAGGAGGAGATATGTTTGAAAGCGTTCCTACAGGAGATGCAATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAACAGTGCGTGCAGCTCTTGAAGAATTGTTACAAAGCTATTCCAAAGGATGGAAAGGTTATTGTTGTGGACTCAATTCTACCTATTGTACCTGAGGAAACAACTACAGCCAAGACTGCTTTCACAGCTGACCTCTTAATGATGACTCAAAACCCAGGAGGGAAAGAGCGGACCCAACAAGAATTCATGGAATTAGTAAAAGGATCTGGATTTAGTGACATCAAATTTGTATGCTGTGTATCTGATCTCTGGGTCGTGGAGCTCTTCAAGTAG 1122 0.4385 MAHSLESNAKPANGESNNLKPREEDDGLVFVMQMRSSFVIPMALRSAIELGVFDILAKAGEGAKLSAEDIAVQIGTNNPEAPTMLDRLLRLLASHSLLHCSVPQHPQSLGLPQRFYSLSHSSKYFVTDADGVSLGPTLELLVDNVFYQSWSELKGAIVEGGVPFNRVYGMHAFEYPSVDPRFNDVFNKAMVNITTIVMKRILESYEGFDRITKLVDVGGGLGINLKLITSKYPHVQGINFDLPHVIKHAPIYAGVEHVGGDMFESVPTGDAIFMKWILHDWSDEQCVQLLKNCYKAIPKDGKVIVVDSILPIVPEETTTAKTAFTADLLMMTQNPGGKERTQQEFMELVKGSGFSDIKFVCCVSDLWVVELFK* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04318 373 PIRSF O-mtase 10 373 IPR016461 GO:0008168
Rops8g04318 373 Pfam O-methyltransferase domain 150 355 IPR001077 GO:0008171
Rops8g04318 373 FunFam Caffeic acid 3-O-methyltransferase 11 125 - -
Rops8g04318 373 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 373 IPR016461 GO:0008168
Rops8g04318 373 MobiDBLite consensus disorder prediction 1 22 - -
Rops8g04318 373 PANTHER O-METHYLTRANSFERASE 32 354 IPR016461 GO:0008168
Rops8g04318 373 Gene3D - 12 125 IPR036388 -
Rops8g04318 373 SUPERFAMILY "Winged helix" DNA-binding domain 23 128 IPR036390 -
Rops8g04318 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 368 IPR029063 -
Rops8g04318 373 Gene3D Vaccinia Virus protein VP39 126 373 IPR029063 -
Rops8g04318 373 FunFam Caffeic acid O-methyltransferase 126 373 - -
Rops8g04318 373 Pfam Dimerisation domain 42 93 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04318 Rops-Chr8 86202018 86203993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04318 24 373 Monolignol Biosynthesis Gene Families AT5G54160 53.429 1.20e-136 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04318 K13066 - gmx:100789402 525.783