Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04316 ATGGAGAGTTTTCAAGGACCCCTCAATTCCTGTTTCTTAGGTGAGCATTTGGAAGTAAATTGTTTAGAGCAAGGCTTTGTTGATGCAGAGAGCTTGAAAATTGTGGAGGATGAACAATATTTGATTTCAAGCTTAGAGGATAACATGCCATTCTTGCAGATGCTTCAGAGTGTAGAATGCCCACAATTTTTCCCTTTAAAAGAACCAAGCTTTCAGACACTCTTAAGACTGCAGCACCTGAAGAAGCCATGTGAAGGGATAACCAACATACCTACCAGATTGGTGACCCAAAGTCAAGTGCTAGAGCTTGAAAGTTGCGTCACTCATGACCTTGTTGACATGCAGTCACCACTGAAATCTGAAAGCAATGATCTTCAACATCCACATTCAGCTTCTGGTGTTGAGAACGTGGGTTATGAGTGCAATCAAGAGCAGCCCAAATCAGCTGAAGATTGTAGCAAGGATGCTATTGGAGACTCAGCTGTTGCTGCTTGGGCTAACACACAGTGCCCCAAAACTCAGGTGGCTACACGTGAACGGAGAAAGAGAAAGAGAACTAGACAAACCAAGAACAAGGAAGACGTTGAGAACCAGCGCATGACCCACATTGCAGTGGAACGCAACAGGCGACGCCAAATGAATAACCATCTTAGTGTTCTTAAATCCCTCATGCCCCCTTCTTATATTCAAAGGGGTGACCATGCATCAATCATTGGAGGTGCAATAGACTTTCTGAAGGAATTGGAGCAGTTACTTCAATCCCTTGAGGCACAAAAAAGGATGAAAAAGAACGAAGATGTTGGTTCCAGTGGGTTGTTTGAACCTGGTTATGGAATGGGTTCATCTACGGAAGAAGCAAACTGTGAGGATGGGATTAAGGCAGAAAAAAAGTCAGAGGCAGCTGCCATAGAGGTCACTGTGATTCAAACCCACGTGAACTTGAAAATTCAGTGCCAAAGGAGACCTGGGCAATTGATAAAAGCTATAGTTGCCTTGGAGGACCTTAGGCTAACTATTCTGCATCTCAACATCACATCCTCAGAAGCTTCAGTTCTTTACTCTTTCAATCTCAAGATTGAAGAAGACAGTAAGATAGGCTCAACAAGAGAAATCACGGAAGCAGTTGGTCATATATTTAGCTCCATTAATGGCAGCTAA 1158 0.4326 MESFQGPLNSCFLGEHLEVNCLEQGFVDAESLKIVEDEQYLISSLEDNMPFLQMLQSVECPQFFPLKEPSFQTLLRLQHLKKPCEGITNIPTRLVTQSQVLELESCVTHDLVDMQSPLKSESNDLQHPHSASGVENVGYECNQEQPKSAEDCSKDAIGDSAVAAWANTQCPKTQVATRERRKRKRTRQTKNKEDVENQRMTHIAVERNRRRQMNNHLSVLKSLMPPSYIQRGDHASIIGGAIDFLKELEQLLQSLEAQKRMKKNEDVGSSGLFEPGYGMGSSTEEANCEDGIKAEKKSEAAAIEVTVIQTHVNLKIQCQRRPGQLIKAIVALEDLRLTILHLNITSSEASVLYSFNLKIEEDSKIGSTREITEAVGHIFSSINGS* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04316 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 264 IPR036638 GO:0046983
Rops8g04316 385 Gene3D - 187 265 IPR036638 GO:0046983
Rops8g04316 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 248 IPR011598 GO:0046983
Rops8g04316 385 MobiDBLite consensus disorder prediction 266 285 - -
Rops8g04316 385 CDD bHLH_AtFAMA_like 200 270 - -
Rops8g04316 385 Pfam Helix-loop-helix DNA-binding domain 198 249 IPR011598 GO:0046983
Rops8g04316 385 SMART finulus 203 254 IPR011598 GO:0046983
Rops8g04316 385 MobiDBLite consensus disorder prediction 172 195 - -
Rops8g04316 385 Coils Coil 245 265 - -
Rops8g04316 385 PANTHER MAX DIMERIZATION, MAD 122 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04316 Rops-Chr8 86153783 86155856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04316 43 384 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 41.926 5.32e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g04316 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04316 - - gmx:100789928 497.278