LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g04315	ATGCAAGCTGAAGCACAAAGCCAAATGGAAGCTCAAAGCTCTGAGCATGCGCAAATTATTGAAATCAGTGGAGATGTTATTCCCGATGTAAGAAGGAACATTTGTGAGGAAGCACCATGTGGATTCTCGAATGCTGGATCCATCTCTAAGGATTCAGAAGAAAGATCAAGTTCCATGCGGAAGCTTATGATGGCAGTGGTTCTTTGTGTTATTTTCATGAGCATTGAAGTAGTTGGTGGCATTAAAGCTAATAGCCTTTCAATTTTGACAGATGCAGCCCATTTGCTTTCAGATGTTGCAGCATTTGCCATCTCTTTATTTTCATTATGGGCTGCTGGTTGGGAAGCCAATCCTCGCCAGTCATATGGATTTTTCAGAATAGAAATTCTTGGTGCTTTGGTTTCTATTCAGCTGATATGGTTGCTCGCTGGGATCCTGGTATATGAAGCCATTGAAAGAATGGTTGCTGGGACTCATCATGTGAATGGATTTTTAATGTTCGTAGTTGCTGCATTTGGTCTAGTGGTTAACATCATTATGGCTCTGTTATTGGGTCATGATCATGGCCATGGACACAATGATCATGGCCACACCCATGGATTTCCTGTGTCTACTCATCATCATCATCATCATCATGTAAAGCATCCAAAAGAATGCCACAACCATCATGCTCCTGAGGAGGAGGTAGCTATACCACTTCTTGGTGGATCAAAATCTAAAGGGAAGAAAAAGAGATGGAACGTAAACGTACAAGGGGCTTATCTGCATGTACTTGGAGACTCTATACAGAGTGTTGGAGTAATGATTGGGGGAGCAATCATATGGTATAATCCTGAGTGGCAATTAGTTGATTTAATTTGCACTTTAATCTTTTCAGTAATTGTTTTGGTGACAACTATCAATATGCTGCGGAACATATTGGAAGTCCTTATGGAGAGCACACCGCGTGAGATAGATGCAGCTAAGCTTGAAAGGGAGTTGCTGGAAATGGAAGAAGTGGTGGCTGTTCATGAGTTGCATATATGGGCCATTACAGTTGGGAAGGTTTTACTGGCTTGTCATGTTAAAATCAGACCACATGTGAATGCAGACATGGTGCTGGAAAAGGTTATAGACTACATCAGAAGGGTTTATAACATCAGCCATGTCACCATACAGATAGAACGCTAG	1170	0.4162	MQAEAQSQMEAQSSEHAQIIEISGDVIPDVRRNICEEAPCGFSNAGSISKDSEERSSSMRKLMMAVVLCVIFMSIEVVGGIKANSLSILTDAAHLLSDVAAFAISLFSLWAAGWEANPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIERMVAGTHHVNGFLMFVVAAFGLVVNIIMALLLGHDHGHGHNDHGHTHGFPVSTHHHHHHHVKHPKECHNHHAPEEEVAIPLLGGSKSKGKKKRWNVNVQGAYLHVLGDSIQSVGVMIGGAIIWYNPEWQLVDLICTLIFSVIVLVTTINMLRNILEVLMESTPREIDAAKLERELLEMEEVVAVHELHIWAITVGKVLLACHVKIRPHVNADMVLEKVIDYIRRVYNISHVTIQIER*	390

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g04315	389	Gene3D	Cation efflux protein transmembrane domain	58	310	IPR027469	-
	Rops8g04315	389	Coils	Coil	320	340	-	-
	Rops8g04315	389	MobiDBLite	consensus disorder prediction	202	218	-	-
	Rops8g04315	389	Pfam	Cation efflux family	62	311	IPR002524	GO:0006812\|GO:0008324\|GO:0016020\|GO:0055085
	Rops8g04315	389	PANTHER	CATION EFFLUX PROTEIN/ ZINC TRANSPORTER	14	389	-	-
	Rops8g04315	389	SUPERFAMILY	Cation efflux protein cytoplasmic domain-like	317	388	IPR036837	-
	Rops8g04315	389	MobiDBLite	consensus disorder prediction	194	221	-	-
	Rops8g04315	389	NCBIfam	cation diffusion facilitator family transporter	59	389	IPR002524	GO:0006812\|GO:0008324\|GO:0016020\|GO:0055085
	Rops8g04315	389	SUPERFAMILY	Cation efflux protein transmembrane domain-like	56	312	IPR027469	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g04315	Rops-Chr8	86142753	86147393	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g04315	9	389	Inorganic Solute Cotransporters	AT2G46800	69.750	5.80e-177	496

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g04315	K14689		-	gmx:100790458	543.888

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