Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04315 ATGCAAGCTGAAGCACAAAGCCAAATGGAAGCTCAAAGCTCTGAGCATGCGCAAATTATTGAAATCAGTGGAGATGTTATTCCCGATGTAAGAAGGAACATTTGTGAGGAAGCACCATGTGGATTCTCGAATGCTGGATCCATCTCTAAGGATTCAGAAGAAAGATCAAGTTCCATGCGGAAGCTTATGATGGCAGTGGTTCTTTGTGTTATTTTCATGAGCATTGAAGTAGTTGGTGGCATTAAAGCTAATAGCCTTTCAATTTTGACAGATGCAGCCCATTTGCTTTCAGATGTTGCAGCATTTGCCATCTCTTTATTTTCATTATGGGCTGCTGGTTGGGAAGCCAATCCTCGCCAGTCATATGGATTTTTCAGAATAGAAATTCTTGGTGCTTTGGTTTCTATTCAGCTGATATGGTTGCTCGCTGGGATCCTGGTATATGAAGCCATTGAAAGAATGGTTGCTGGGACTCATCATGTGAATGGATTTTTAATGTTCGTAGTTGCTGCATTTGGTCTAGTGGTTAACATCATTATGGCTCTGTTATTGGGTCATGATCATGGCCATGGACACAATGATCATGGCCACACCCATGGATTTCCTGTGTCTACTCATCATCATCATCATCATCATGTAAAGCATCCAAAAGAATGCCACAACCATCATGCTCCTGAGGAGGAGGTAGCTATACCACTTCTTGGTGGATCAAAATCTAAAGGGAAGAAAAAGAGATGGAACGTAAACGTACAAGGGGCTTATCTGCATGTACTTGGAGACTCTATACAGAGTGTTGGAGTAATGATTGGGGGAGCAATCATATGGTATAATCCTGAGTGGCAATTAGTTGATTTAATTTGCACTTTAATCTTTTCAGTAATTGTTTTGGTGACAACTATCAATATGCTGCGGAACATATTGGAAGTCCTTATGGAGAGCACACCGCGTGAGATAGATGCAGCTAAGCTTGAAAGGGAGTTGCTGGAAATGGAAGAAGTGGTGGCTGTTCATGAGTTGCATATATGGGCCATTACAGTTGGGAAGGTTTTACTGGCTTGTCATGTTAAAATCAGACCACATGTGAATGCAGACATGGTGCTGGAAAAGGTTATAGACTACATCAGAAGGGTTTATAACATCAGCCATGTCACCATACAGATAGAACGCTAG 1170 0.4162 MQAEAQSQMEAQSSEHAQIIEISGDVIPDVRRNICEEAPCGFSNAGSISKDSEERSSSMRKLMMAVVLCVIFMSIEVVGGIKANSLSILTDAAHLLSDVAAFAISLFSLWAAGWEANPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIERMVAGTHHVNGFLMFVVAAFGLVVNIIMALLLGHDHGHGHNDHGHTHGFPVSTHHHHHHHVKHPKECHNHHAPEEEVAIPLLGGSKSKGKKKRWNVNVQGAYLHVLGDSIQSVGVMIGGAIIWYNPEWQLVDLICTLIFSVIVLVTTINMLRNILEVLMESTPREIDAAKLERELLEMEEVVAVHELHIWAITVGKVLLACHVKIRPHVNADMVLEKVIDYIRRVYNISHVTIQIER* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04315 389 Gene3D Cation efflux protein transmembrane domain 58 310 IPR027469 -
Rops8g04315 389 Coils Coil 320 340 - -
Rops8g04315 389 MobiDBLite consensus disorder prediction 202 218 - -
Rops8g04315 389 Pfam Cation efflux family 62 311 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Rops8g04315 389 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 14 389 - -
Rops8g04315 389 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 317 388 IPR036837 -
Rops8g04315 389 MobiDBLite consensus disorder prediction 194 221 - -
Rops8g04315 389 NCBIfam cation diffusion facilitator family transporter 59 389 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Rops8g04315 389 SUPERFAMILY Cation efflux protein transmembrane domain-like 56 312 IPR027469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04315 Rops-Chr8 86142753 86147393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04315 9 389 Inorganic Solute Cotransporters AT2G46800 69.750 5.80e-177 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04315 K14689 - gmx:100790458 543.888