Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04312 ATGGCTGAGAAGGTAGTGATGCAGACGCAGCAGGAGGAGGAGGAGCAGGGCAGCAAGAACCGCAATGCGTCACCAGAGGTGGTGGTTAGGTGGGAGAGGTTTCTGCCTCGGATGGTGCTGAGGGTTTTGCTGGTCGAAGCTGATGATTCTACTCGCCAGATCATTGCTGCTCTTCTCCGTGAATGCAGTTACAGAGTTGCTGCAGTTCGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAGCACCCGAGATAGATCTCATATTAACAGAAGTGGAGTTGCCATCAATATCTGGATTTTCACTTCTTACTTCAATCATGGAGCATGACATTTGCAAAAACATTCCTGTCATAATGATGTCTTCTCGTGATTCAGTTAGCATGGCATTCAAATGCATGTTAAAAGGTGCAGCCGATTTTCTCATAAAACCTGTTCGGAAGAATGAGCTAAGGAACTTGTGGCAACATGTTTGGAGAAGGCATGCTATTAGCAGGCCTCCTCAAAATTTAACATTTCCACAGAATAAACTTGATGTTGCTGAAGAAAATAATGCTGCAAGCAATGATTCTAGTGGTTCTGTGGCTTCCACGCAGAAAAATAATGAATGCAGCATGAAAACTAGTGAGGCTCAAAGCACTTGTACATCGCCATTTTTGGAAGCTGAGAGTGCATACATGGAAAATATGCAGGATACGTCCCAGCTGAAGAGTTCTTCCAATTTAAGCAATATTGATACAGTGAAGCACGAAAAGCCTACCAAATTTGAAAGGGAATCAGCTAAGCATGACGATGAAGCTGGAGAGAAATCAATTATATTTGTACCCGAAGCTGCTGGGTGCAACAAAACTTCAACAGCTTTAAGGCTAAGCCAAGGCTATGATTATAGTGAAACGGAAAACCAAGATGAAGTTGTGAGAACAGAGTTAAGCAAAGCTAATCCTCATAATAATATGGAGATTCATGGAGGCAGTGATGAACTGGTAGAACCTTCTATTGGGGCTATTGACTTGATTGCTACATTCGAGAATCTTCCAAAGAGCACTGATGAAAATTGTAGTTTCAATGGTGGTAACACAGCTAAGTTTGATTTTGATACACAATTGGAACTTTCTTTAAGAAGAGATTTTCCAGGCAGCTCATATAAACCTGCAGCAACTGAGGAAAGGCAAATATTGAACCATTCAAATGCTTCTGCTTTTTCACGGTATAGCAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAACAATGAATTCTCATGAATCCCATAAATTATCTGAAAATACAAACACTTCTGATCAATATGGTGGCAAAAAAAAAAATCAGGAGAATATCACCACTGTGGTCGTTGGTCAATCTGGACAAATCGAAGCAAAATTGCCAAACAGTCAACTTGGATTCTTTCCTGCTACTGGGGTACTGGGCAATGTTTTTCCTTCCATGCTCTCTGCCCAATCAGATATGCATCCCAAATGGATTTCAAAGCCAGTTTGCCAGAAAGAGAGTTCTCCATTTCCCACAAGTACTTCTTCCCATTCCAATCCTGAAAGTCACAACTCAGAACATCATCACTGGTCGGATGATGCCACCTATACTTCTGATCAAAATGTAAACAATCAAAGCAATTTGGATTGTGCGATGCATGACTCTCCTGCTACTGGTCAAAGTTCCGATACTAGTTTCTACCATGATGCGGCAAATCATAATAGTAGTGGTGTACATGGAAGCGTGGGAAGTGGAAGTGATGGAAATGCCATGTCATCTGTTGTCTCCAACAATGATGTTAAAAGTTTTATGGATAGTGGTCATCATAGTTATGATGGATTCACAGGGACAGATTCTTATCACACCAGTCAAAGAGAAGCTGCTCTAACAAAGTTTCGTCTAAAGCGGAAAGACAGATGCTTTGAGAAAAAGGTCCGATATGAAAGCCGGAAAAGATTGGCAGAGCAGCGCCCGCGTGTGAAAGGGCAGTTTGTTCGCCAAGCACACGACGAACATCTAGTGGCAGATGCCGGTGGCGGTTCCTAA 2031 0.4225 MAEKVVMQTQQEEEEQGSKNRNASPEVVVRWERFLPRMVLRVLLVEADDSTRQIIAALLRECSYRVAAVRDGLKAWETLKNKAPEIDLILTEVELPSISGFSLLTSIMEHDICKNIPVIMMSSRDSVSMAFKCMLKGAADFLIKPVRKNELRNLWQHVWRRHAISRPPQNLTFPQNKLDVAEENNAASNDSSGSVASTQKNNECSMKTSEAQSTCTSPFLEAESAYMENMQDTSQLKSSSNLSNIDTVKHEKPTKFERESAKHDDEAGEKSIIFVPEAAGCNKTSTALRLSQGYDYSETENQDEVVRTELSKANPHNNMEIHGGSDELVEPSIGAIDLIATFENLPKSTDENCSFNGGNTAKFDFDTQLELSLRRDFPGSSYKPAATEERQILNHSNASAFSRYSSSKLLQPLFPTMNSHESHKLSENTNTSDQYGGKKKNQENITTVVVGQSGQIEAKLPNSQLGFFPATGVLGNVFPSMLSAQSDMHPKWISKPVCQKESSPFPTSTSSHSNPESHNSEHHHWSDDATYTSDQNVNNQSNLDCAMHDSPATGQSSDTSFYHDAANHNSSGVHGSVGSGSDGNAMSSVVSNNDVKSFMDSGHHSYDGFTGTDSYHTSQREAALTKFRLKRKDRCFEKKVRYESRKRLAEQRPRVKGQFVRQAHDEHLVADAGGGS* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04312 676 MobiDBLite consensus disorder prediction 497 588 - -
Rops8g04312 676 Pfam Response regulator receiver domain 42 153 IPR001789 GO:0000160
Rops8g04312 676 MobiDBLite consensus disorder prediction 419 440 - -
Rops8g04312 676 SUPERFAMILY CheY-like 40 170 IPR011006 -
Rops8g04312 676 MobiDBLite consensus disorder prediction 1 22 - -
Rops8g04312 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 384 IPR045279 GO:0009736
Rops8g04312 676 Pfam CCT motif 620 662 IPR010402 GO:0005515
Rops8g04312 676 CDD psREC_PRR 42 145 - -
Rops8g04312 676 MobiDBLite consensus disorder prediction 233 264 - -
Rops8g04312 676 ProSiteProfiles CCT domain profile. 620 662 IPR010402 GO:0005515
Rops8g04312 676 MobiDBLite consensus disorder prediction 183 213 - -
Rops8g04312 676 MobiDBLite consensus disorder prediction 233 247 - -
Rops8g04312 676 MobiDBLite consensus disorder prediction 248 264 - -
Rops8g04312 676 MobiDBLite consensus disorder prediction 500 515 - -
Rops8g04312 676 MobiDBLite consensus disorder prediction 530 588 - -
Rops8g04312 676 ProSiteProfiles Response regulatory domain profile. 41 159 IPR001789 GO:0000160
Rops8g04312 676 SMART REC_2 40 155 IPR001789 GO:0000160
Rops8g04312 676 Gene3D - 38 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04312 Rops-Chr8 86107956 86113455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04312 325 664 Response Regulator Gene Family AT5G24470 28.324 3.80e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Rops8g04312 Response_reg 1.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04312 K12130 - gmx:100779346 945.651