LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g04312	ATGGCTGAGAAGGTAGTGATGCAGACGCAGCAGGAGGAGGAGGAGCAGGGCAGCAAGAACCGCAATGCGTCACCAGAGGTGGTGGTTAGGTGGGAGAGGTTTCTGCCTCGGATGGTGCTGAGGGTTTTGCTGGTCGAAGCTGATGATTCTACTCGCCAGATCATTGCTGCTCTTCTCCGTGAATGCAGTTACAGAGTTGCTGCAGTTCGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAGCACCCGAGATAGATCTCATATTAACAGAAGTGGAGTTGCCATCAATATCTGGATTTTCACTTCTTACTTCAATCATGGAGCATGACATTTGCAAAAACATTCCTGTCATAATGATGTCTTCTCGTGATTCAGTTAGCATGGCATTCAAATGCATGTTAAAAGGTGCAGCCGATTTTCTCATAAAACCTGTTCGGAAGAATGAGCTAAGGAACTTGTGGCAACATGTTTGGAGAAGGCATGCTATTAGCAGGCCTCCTCAAAATTTAACATTTCCACAGAATAAACTTGATGTTGCTGAAGAAAATAATGCTGCAAGCAATGATTCTAGTGGTTCTGTGGCTTCCACGCAGAAAAATAATGAATGCAGCATGAAAACTAGTGAGGCTCAAAGCACTTGTACATCGCCATTTTTGGAAGCTGAGAGTGCATACATGGAAAATATGCAGGATACGTCCCAGCTGAAGAGTTCTTCCAATTTAAGCAATATTGATACAGTGAAGCACGAAAAGCCTACCAAATTTGAAAGGGAATCAGCTAAGCATGACGATGAAGCTGGAGAGAAATCAATTATATTTGTACCCGAAGCTGCTGGGTGCAACAAAACTTCAACAGCTTTAAGGCTAAGCCAAGGCTATGATTATAGTGAAACGGAAAACCAAGATGAAGTTGTGAGAACAGAGTTAAGCAAAGCTAATCCTCATAATAATATGGAGATTCATGGAGGCAGTGATGAACTGGTAGAACCTTCTATTGGGGCTATTGACTTGATTGCTACATTCGAGAATCTTCCAAAGAGCACTGATGAAAATTGTAGTTTCAATGGTGGTAACACAGCTAAGTTTGATTTTGATACACAATTGGAACTTTCTTTAAGAAGAGATTTTCCAGGCAGCTCATATAAACCTGCAGCAACTGAGGAAAGGCAAATATTGAACCATTCAAATGCTTCTGCTTTTTCACGGTATAGCAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAACAATGAATTCTCATGAATCCCATAAATTATCTGAAAATACAAACACTTCTGATCAATATGGTGGCAAAAAAAAAAATCAGGAGAATATCACCACTGTGGTCGTTGGTCAATCTGGACAAATCGAAGCAAAATTGCCAAACAGTCAACTTGGATTCTTTCCTGCTACTGGGGTACTGGGCAATGTTTTTCCTTCCATGCTCTCTGCCCAATCAGATATGCATCCCAAATGGATTTCAAAGCCAGTTTGCCAGAAAGAGAGTTCTCCATTTCCCACAAGTACTTCTTCCCATTCCAATCCTGAAAGTCACAACTCAGAACATCATCACTGGTCGGATGATGCCACCTATACTTCTGATCAAAATGTAAACAATCAAAGCAATTTGGATTGTGCGATGCATGACTCTCCTGCTACTGGTCAAAGTTCCGATACTAGTTTCTACCATGATGCGGCAAATCATAATAGTAGTGGTGTACATGGAAGCGTGGGAAGTGGAAGTGATGGAAATGCCATGTCATCTGTTGTCTCCAACAATGATGTTAAAAGTTTTATGGATAGTGGTCATCATAGTTATGATGGATTCACAGGGACAGATTCTTATCACACCAGTCAAAGAGAAGCTGCTCTAACAAAGTTTCGTCTAAAGCGGAAAGACAGATGCTTTGAGAAAAAGGTCCGATATGAAAGCCGGAAAAGATTGGCAGAGCAGCGCCCGCGTGTGAAAGGGCAGTTTGTTCGCCAAGCACACGACGAACATCTAGTGGCAGATGCCGGTGGCGGTTCCTAA	2031	0.4225	MAEKVVMQTQQEEEEQGSKNRNASPEVVVRWERFLPRMVLRVLLVEADDSTRQIIAALLRECSYRVAAVRDGLKAWETLKNKAPEIDLILTEVELPSISGFSLLTSIMEHDICKNIPVIMMSSRDSVSMAFKCMLKGAADFLIKPVRKNELRNLWQHVWRRHAISRPPQNLTFPQNKLDVAEENNAASNDSSGSVASTQKNNECSMKTSEAQSTCTSPFLEAESAYMENMQDTSQLKSSSNLSNIDTVKHEKPTKFERESAKHDDEAGEKSIIFVPEAAGCNKTSTALRLSQGYDYSETENQDEVVRTELSKANPHNNMEIHGGSDELVEPSIGAIDLIATFENLPKSTDENCSFNGGNTAKFDFDTQLELSLRRDFPGSSYKPAATEERQILNHSNASAFSRYSSSKLLQPLFPTMNSHESHKLSENTNTSDQYGGKKKNQENITTVVVGQSGQIEAKLPNSQLGFFPATGVLGNVFPSMLSAQSDMHPKWISKPVCQKESSPFPTSTSSHSNPESHNSEHHHWSDDATYTSDQNVNNQSNLDCAMHDSPATGQSSDTSFYHDAANHNSSGVHGSVGSGSDGNAMSSVVSNNDVKSFMDSGHHSYDGFTGTDSYHTSQREAALTKFRLKRKDRCFEKKVRYESRKRLAEQRPRVKGQFVRQAHDEHLVADAGGGS*	677

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops8g04312	676	MobiDBLite	consensus disorder prediction	497	588	-	-
Rops8g04312	676	Pfam	Response regulator receiver domain	42	153	IPR001789	GO:0000160
Rops8g04312	676	MobiDBLite	consensus disorder prediction	419	440	-	-
Rops8g04312	676	SUPERFAMILY	CheY-like	40	170	IPR011006	-
Rops8g04312	676	MobiDBLite	consensus disorder prediction	1	22	-	-
Rops8g04312	676	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	40	384	IPR045279	GO:0009736
Rops8g04312	676	Pfam	CCT motif	620	662	IPR010402	GO:0005515
Rops8g04312	676	CDD	psREC_PRR	42	145	-	-
Rops8g04312	676	MobiDBLite	consensus disorder prediction	233	264	-	-
Rops8g04312	676	ProSiteProfiles	CCT domain profile.	620	662	IPR010402	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g04312	Rops-Chr8	86107956	86113455	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g04312	325	664	Response Regulator Gene Family	AT5G24470	28.324	3.80e-20	92.8

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Pseudo ARR-B	Rops8g04312		Response_reg	1.6e-21	CL0304

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g04312	K12130		-	gmx:100779346	945.651

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