Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04309 ATGGCAGCTAACGCTACTCTGTCTCTCTCCATCACTTCACCGTCTCCTTCTTACTCCTCGTTACTGAAAACGATTCGTTTCGTGAAACACAAGCCCCAATTCGTATGTGCTACGAAACGATTCGTTTCGTGTCCGTCAGGGCCGTTTCCTTTCTTGTGTCTTGTTGCGTGGCGCAGCTCCAAGGCTAGGGTTTGCACTGCCTTGGCAGCTGTGGTGGATGAAGAAACGGCGGTCGCAGACGGAGGAGAATTTGTGGAGCAAGAAAACGATGGCGTTTCGGAGGAGGGAGAACAGTGGAGGCAGGGAAGAGCGACCGAAGTGTACGTTTGCAACCTTCCCAGAAGCTGTGACTCAGAACAACTACTTGATATGTTCAAACCTCATGGAACCATTCTATCTGTTGAGGTTTTCCGGAATCCGGAGACTGGTGAAAGTAAAGGGAGTGCTTATGTCACAATGGCATCTATTAACTCAGCAAAAAATGCAGTTGCTGCATTGGATGGATCGGATGTTGGTGGGCGTGAAATGCGGGTTAGATTTTCAGTTGAGATGAATGCTAAGAAGAGGAATCTTGAGACAATGAACTCGTTACCCAAGAGAACTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTGCTAGGTCTGCTAAACCTGAAGACGTGAGACATCTTTTTGGTAGATTTGGTAATGTGGCTAGTGTAAGGGTGATGCAAGATTTGAAACAAGGGAAAAACCGGGTCTATGCTTTTGTCTCTTATCTTTCAGAGAGAGAACGTGATGCAGCAATGTCACTCAATGGAACAGAATTTTGTGGTCGTAAACTAGTGGTTAGAGAGGGTGTAGAGAGGAGGACTGAGACCTAG 873 0.4628 MAANATLSLSITSPSPSYSSLLKTIRFVKHKPQFVCATKRFVSCPSGPFPFLCLVAWRSSKARVCTALAAVVDEETAVADGGEFVEQENDGVSEEGEQWRQGRATEVYVCNLPRSCDSEQLLDMFKPHGTILSVEVFRNPETGESKGSAYVTMASINSAKNAVAALDGSDVGGREMRVRFSVEMNAKKRNLETMNSLPKRTIYYEGPHKLYVGNLARSAKPEDVRHLFGRFGNVASVRVMQDLKQGKNRVYAFVSYLSERERDAAMSLNGTEFCGRKLVVREGVERRTET* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04309 290 FunFam 30S ribosomal protein 2, chloroplastic 196 283 - -
Rops8g04309 290 Gene3D - 196 290 IPR012677 -
Rops8g04309 290 SUPERFAMILY RNA-binding domain, RBD 204 286 IPR035979 GO:0003676
Rops8g04309 290 PANTHER OS02G0815200 PROTEIN 46 281 - -
Rops8g04309 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Rops8g04309 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Rops8g04309 290 SUPERFAMILY RNA-binding domain, RBD 105 187 IPR035979 GO:0003676
Rops8g04309 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Rops8g04309 290 SMART rrm1_1 209 281 IPR000504 GO:0003723
Rops8g04309 290 SMART rrm1_1 106 179 IPR000504 GO:0003723
Rops8g04309 290 Gene3D - 71 195 IPR012677 -
Rops8g04309 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04309 Rops-Chr8 86066312 86068015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04309 96 286 Eukaryotic Initiation Factors Gene Family AT3G16380 29.167 1.36e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04309 - - gsj:114400287 310.457