Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04304 ATGGGTAATGCTTGGTTTGGGAAAAAGAGGAGCAACAAGGGGGTGGTGCACCCTATGGTTCACCGTGTCAGTGATCATCAAGGAGTGACAATCAAGGTGCGAATGAGCAGAGGGCAACTCAAGGATTTAATAGAGAAGGTGGATATGAGCGATGGCAATTCAGAATTAGGCTGTTTGATAGTTCAAGAATGCTCCAAGGGGAGGCTTCATGCTCGTTTTGCTGCTGCTGCTGCTGCCGGAGATTATTATGAAAGGGCAAACAGCGGAGCATTCTTCACTCTCTTGTCATCTCCGATCTCTTTTCATTTGGGTGTGAAAATGTCGATTGGAGAAACTGCTTGCACATACGCCCTACTCATCCTTGAGGATGAAAAAATCGCCGTCACTGCTGAGAAAATCTCTACCTTGTTGAAAAGTGCGAACGTTGAGGTAGAATCTTATTGGGCCAGCTTATTTGCTAAACTTGCTGAGAAGAAAAAAATTGGAGATTTGATAGCGAGTGCTGGCGGTGGTGGGGCTCCAGTTGCCGTTGTAGCCGCCCCAGCTGCTGTTGCAGGTGGCGCTGCTGCCGCAACTGCTCCTGCTGCTGAGGAAAAGAAGAAGGAAGAACCCCAAGAAGAGAGTGACGATGATTTGGGATTCGGCTTGTTTGATTAG 657 0.4795 MGNAWFGKKRSNKGVVHPMVHRVSDHQGVTIKVRMSRGQLKDLIEKVDMSDGNSELGCLIVQECSKGRLHARFAAAAAAGDYYERANSGAFFTLLSSPISFHLGVKMSIGETACTYALLILEDEKIAVTAEKISTLLKSANVEVESYWASLFAKLAEKKKIGDLIASAGGGGAPVAVVAAPAAVAGGAAAATAPAAEEKKKEEPQEESDDDLGFGLFD* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04304 218 Hamap 50S ribosomal protein L12 [rpl12]. 112 218 IPR027534 GO:0003735|GO:0005840|GO:0006414
Rops8g04304 218 FunFam 60S acidic ribosomal protein P1 107 169 - -
Rops8g04304 218 Pfam 60s Acidic ribosomal protein 128 217 - -
Rops8g04304 218 Gene3D - 107 169 IPR038716 -
Rops8g04304 218 MobiDBLite consensus disorder prediction 193 218 - -
Rops8g04304 218 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 107 218 - -
Rops8g04304 218 CDD Ribosomal_P1 111 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04304 Rops-Chr8 86046883 86054684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04304 107 218 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 55.263 6.66e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04304 K02942 - gmx:100791962 97.4413