Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04302 ATGCTGGAAAACATGAGTATATCTGTGAATGGACAATCTCAAGTCCCTCCAGGCTTCCGGTTTCATCCAACTGAAGAGGAGCTGTTACAGTACTACTTGAAGAAGAAGGTTTCCTTTGAGAAGATCGACCTCGACGTGATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGACATACAAGAGAAGTGCAAAATAGGAACCACCCCACAAAACGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCCACGGGAACCCGTACCAACCGCGCCACGGCCATGGGGTTCTGGAAGGCCACCGGCCGCGACAAGGTGATACAGAGCAACGGCAAGAGGATTGGAATGAGAAAAACTTTGGTTTTCTACAAAGGCCGAGCCCCCCATGGCCAAAAATCCGATTGGATCATGCATGAATATAGACTAGACGACAATGTCACCACTATGGTGTCCAATGTGATGGAAGATGCAGCCCAGGAAGAAGGTTGGGTGGTATGTAGAATATTCAAGAAGAAGAACCTTCTCAAAAGCCCCTCAGCCTCGTCCATCGCTGGGGAAACCAGAGGAAGCCACTTGTTTGATTCTCGTGACAAGGGAGCTTTGGAACAAATACTTGAGCAAATGGGGAGGGGCTACGTGGACGAAGCCAATTACAATAGTGCCTTTGATGCAGACATCAACAATGGCGACAAGTTGTTGAAACTCCCAAGCCTAGGCAGCCCAAAATCCATGAGCATGGAGAGCCAACAAAACAATAAAAATAATGGGTACCATCCCATTATTCCAGTAGAGATGGTCAGGGACAAAGGTTCGTTCATAACCCAGAAGGTGAATAATTTGGTTCATCCAATGGCGATAGGAAGAGACTGGTCGACCATGGATCAGCTGGTTGCATCCCAACTGAATGGCCAAAGTGAGGCTTCTAGGCAGTTGGCTTGCTTCAACGACCCCACCATGGGATTTTGCATTCTCGAGCATGATTTGCAACTGCCCACCTTGCTATTATCATCGTCATCAACACCAACACATAGCAGGCCTACTACCTATATCACTCCCACAAAGGATCACACCAGCGAGATTGACCCATGGAACTTTGCTTGA 1104 0.4746 MLENMSISVNGQSQVPPGFRFHPTEEELLQYYLKKKVSFEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAMGFWKATGRDKVIQSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNVTTMVSNVMEDAAQEEGWVVCRIFKKKNLLKSPSASSIAGETRGSHLFDSRDKGALEQILEQMGRGYVDEANYNSAFDADINNGDKLLKLPSLGSPKSMSMESQQNNKNNGYHPIIPVEMVRDKGSFITQKVNNLVHPMAIGRDWSTMDQLVASQLNGQSEASRQLACFNDPTMGFCILEHDLQLPTLLLSSSSTPTHSRPTTYITPTKDHTSEIDPWNFA* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04302 367 MobiDBLite consensus disorder prediction 340 367 - -
Rops8g04302 367 SUPERFAMILY NAC domain 8 172 IPR036093 GO:0003677|GO:0006355
Rops8g04302 367 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 247 - -
Rops8g04302 367 ProSiteProfiles NAC domain profile. 15 172 IPR003441 GO:0003677|GO:0006355
Rops8g04302 367 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Rops8g04302 367 Gene3D NAC domain 24 176 IPR036093 GO:0003677|GO:0006355
Rops8g04302 367 MobiDBLite consensus disorder prediction 340 359 - -
Rops8g04302 367 FunFam NAC domain-containing protein 24 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04302 Rops-Chr8 85999540 86000805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04302 1 365 NAC Transcription Factor Family AT2G46770 54.830 2.38e-126 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g04302 NAM 5.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04302 - - gmx:100793308 501.901