Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04294 ATGGATGATGATGTTGAAGAACAAATAGACGATGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTATTGAAGAGCATGAATATGAGGAGTCAGCAGCAGAGGCTGGTGGGAAAGATCAATTGCATGAAGCAGAAAAAAGTGACAATGCCACTGAATTTGTGGAAGATGAGCAAAAACCATCTCTCGTTGATGAAGATGAGAAAGAGAAGCATGATGAACTTCTTGCCCTTCCTCCACATGGTTCTGAAGTTTTTATTGGTGGACTTCCTCGTGATGCATGTGAAGATGATTTAAGGGAATTGTGCGAGCCAATGGGTGATATTCTTGAGGTGCGATTAATGAAAGACAGGGACACCGGAGAAAGCAAGGGTTATGCTTTTGTGGCTTTTAAAACAAAAGAGGTAGCGCAAAGGGCCATTGAGGAGATACATAACAAGGAATTTAAGGGTAAAACTTTGAGGTGTTCACTGTCCGAAACCAAACACAGATTGTTCATCGGTAATGTTCCAAAAACTTTGACGGAGGATGAGTTTAGGAAAGTCATTGAGGGTGTTGGTCCCGGAGTTGATAACATTGAGCTCATAAAGGACCCTCAAAATCCAAGCAGAAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCTTGTGCTGATTATTCACGGCAAAAGATGTCAAGTGCGAGTTTTAAGCTAGATGGAAATACACCAACTGTCACATGGGCTGATCCAAAGAACTCACCTGACCATTCTGCTTCTTCACAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAACGTTACCACTGAACAACTGAAGGAACTATTCCGTCATCATGGGGAAGTGACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCCGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACAGAGAAATATGAAATTGATGGCCAAATGCTTGAAGTAGTTCTTGCCAAGCCTCAAACAGAAAAAAAACCTGAGGGAGGTTATGCCTACAATCCTGGACTTCATCCAAACCATCTTCCACATCCTGGTTATGGTAACTTTTCTGGAAATCTTTATGGCTCTTTAGGCGCTGGATACGGTGTTGCTGCTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTTTTACCAGATGGTCGAATTGGCTATGTCCTTCAGCAGCCTGGTGTACAGGTGCCACCTGCCCGACCCCGCAGAATGGACCGGAGCAATGGTCCAAGCGTTCAGCCGGGGCGAGGAGGAGGTAGTGGTAATGATGAAGGCAATCGCAGTAGAAGGTATCGACCCTATTAG 1383 0.4382 MDDDVEEQIDDDGVDGGEDENAEGSIEEHEYEESAAEAGGKDQLHEAEKSDNATEFVEDEQKPSLVDEDEKEKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGESKGYAFVAFKTKEVAQRAIEEIHNKEFKGKTLRCSLSETKHRLFIGNVPKTLTEDEFRKVIEGVGPGVDNIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSASFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRHHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQTEKKPEGGYAYNPGLHPNHLPHPGYGNFSGNLYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPPARPRRMDRSNGPSVQPGRGGGSGNDEGNRSRRYRPY* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04294 460 CDD RRM_SF 87 159 - -
Rops8g04294 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 337 IPR000504 GO:0003723
Rops8g04294 460 SMART rrm2_1 86 159 IPR003954 GO:0003676
Rops8g04294 460 SMART rrm1_1 166 243 IPR000504 GO:0003723
Rops8g04294 460 SMART rrm1_1 261 333 IPR000504 GO:0003723
Rops8g04294 460 SMART rrm1_1 86 159 IPR000504 GO:0003723
Rops8g04294 460 MobiDBLite consensus disorder prediction 28 73 - -
Rops8g04294 460 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 166 246 - -
Rops8g04294 460 SUPERFAMILY RNA-binding domain, RBD 254 352 IPR035979 GO:0003676
Rops8g04294 460 Gene3D - 7 165 IPR012677 -
Rops8g04294 460 Gene3D - 248 356 IPR012677 -
Rops8g04294 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 163 IPR000504 GO:0003723
Rops8g04294 460 MobiDBLite consensus disorder prediction 1 27 - -
Rops8g04294 460 MobiDBLite consensus disorder prediction 419 460 - -
Rops8g04294 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 328 IPR000504 GO:0003723
Rops8g04294 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 157 IPR000504 GO:0003723
Rops8g04294 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 233 IPR000504 GO:0003723
Rops8g04294 460 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 1 165 - -
Rops8g04294 460 MobiDBLite consensus disorder prediction 1 73 - -
Rops8g04294 460 ProSitePatterns EF-hand calcium-binding domain. 19 31 IPR018247 -
Rops8g04294 460 SUPERFAMILY RNA-binding domain, RBD 166 253 IPR035979 GO:0003676
Rops8g04294 460 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 17 424 - -
Rops8g04294 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 247 IPR000504 GO:0003723
Rops8g04294 460 Gene3D - 166 246 IPR012677 -
Rops8g04294 460 SUPERFAMILY RNA-binding domain, RBD 80 164 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04294 Rops-Chr8 85858284 85868465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04294 87 413 Eukaryotic Initiation Factors Gene Family AT1G71770 26.579 1.22e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04294 K13161 - gmx:100790907 795.808