Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04288 ATGGGTCAGTGCTACGGCAAGACCAACCCCACTGGGGAGAATCCAGATGAGCCGAACACGACCACCATAATTGCCGCCTCCGGTGACGGAGCTCGTTCTCCGATGTACTCCGGCAGCGGCGTCAACGGTTTTCCGTCGGTGAAAAACACGCCGGCTCGGTCATCCTCGCATGCCAGTCCCTGGCCGAGTCCCTACCCTCACGGTGTGAACCCGAGTCCATCGCCGGCGAGGGCGGGGACTCCGAGGAGGTTTTTCCGGCGACCTTTTCCGCCGCCGTCTCCGGCGAAGCATATAAGGGCGTCTCTGGCGAAGAGGCTTGGACAGGGGAAGCCCAAAGAAGGCCCAATACCGGAGGAGCGTGGAGCGGAACAGGAACAGTCGTTGGATAAGAGCTTTGGGTATAGCAAGAACTTTGGAGCTAAGTATGAGCTTGGAAAAGAAGTGGGGCGAGGGCATTTTGGTCATACTTGCTCTGCAAGGGCTAAGAAGGGTGAACTCAAAGACCAAACTGTTGCTGTTAAAATAATTTCCAAGGCCAAGATGACCACAGCAATAGCAATTGAAGATGTTCGTAGAGAGGTGAAGCTATTAAAAGCACTGTCTGGCCATAAGCATCTTGTCAAATTCCATGATGCTTGCGAGGATGCCAATAACGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACCGAATTTTGTCAAGGGGAGGAAGGTATACAGAGGAGGATGCGAAAGTTATAGTTTTGCAGATTCTAAGCGTAGTTGCCTTTTGTCATCTTCAAGGTGTTGTGCACCGTGACCTGAAGCCTGAGAATTTCCTCTTCACTTCAAGAAGTGAAGATGCTGATATGAAGCTTATTGATTTTGGTCTGTCTGACTTCATCAGGCCAGATGAAAGGTTGAATGACATTGTTGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCTTATAGTGTGGAAGCAGATATATGGAGTATTGGCGTTATTACCTACATCTTATTGTGTGGAAGTCGACCTTTCTGGGCACGAACAGAATCTGGAATCTTTCGTGCTGTGCTACGGGCTGATCCCAACTTTGATGATTTACCTTGGCCATCTGTATCTCCAGAGGCCAAGGACTTTGTTAAAAGGCTCCTAAACAAGGACTACAGGAAAAGAATGACTGCTGCCCAAGCTCTAACTCACCCTTGGTTGAGGGATGACAGCCGTCCTATCCCTTTAGATATATTAATTTATAAATTGGTGAAGTCTTATCTTCATGCGACACCATTCAAATGTGCAGCAGTGAAGGCCCTTTCAAAAGCCTTGACAGAGGATCAGTTGGTGTATCTGAGAGCACAATTCAGATTGTTGGAACCAAATAGAGATGGGCACATCTCCCTTGACAATTTCAAAATGGCTCTTGCACGTCATGCAACTGATGCCGTGAGGGAGTCAAGGGTTCTTGACATCATACATATGATGGAATCACTTGCCTATAGAAAGATGGATTTTGAAGAATTTTGTGCAGCTGCAACTAGCACATATCAATTAGAGGCACTTGATAGGTGGGAAGATATCGCCAGCACTGCTTTTGAGCATTTTGAGAGAGAAGGCAACCGTATGATATCAATTGAAGAATTAGCAAGAGAGTTAAACCTTGGTCCTTCAGCTTATTCAGTTATCAAAGATTGGATACGAAATACTGATGGAAAGCTTAGTTTACTTGGATATACAAAATTTTTACATGGTGTGACTCTCCGGAGTTCAATCCCAAGACCCCGTTAG 1785 0.4672 MGQCYGKTNPTGENPDEPNTTTIIAASGDGARSPMYSGSGVNGFPSVKNTPARSSSHASPWPSPYPHGVNPSPSPARAGTPRRFFRRPFPPPSPAKHIRASLAKRLGQGKPKEGPIPEERGAEQEQSLDKSFGYSKNFGAKYELGKEVGRGHFGHTCSARAKKGELKDQTVAVKIISKAKMTTAIAIEDVRREVKLLKALSGHKHLVKFHDACEDANNVYIVMELCEGGELLDRILSRGGRYTEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVITYILLCGSRPFWARTESGIFRAVLRADPNFDDLPWPSVSPEAKDFVKRLLNKDYRKRMTAAQALTHPWLRDDSRPIPLDILIYKLVKSYLHATPFKCAAVKALSKALTEDQLVYLRAQFRLLEPNRDGHISLDNFKMALARHATDAVRESRVLDIIHMMESLAYRKMDFEEFCAAATSTYQLEALDRWEDIASTAFEHFEREGNRMISIEELARELNLGPSAYSVIKDWIRNTDGKLSLLGYTKFLHGVTLRSSIPRPR* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04288 594 FunFam Calcium-dependent protein kinase SK5 314 413 - -
Rops8g04288 594 MobiDBLite consensus disorder prediction 39 61 - -
Rops8g04288 594 Gene3D - 422 584 - -
Rops8g04288 594 Gene3D Transferase(Phosphotransferase) domain 1 232 421 - -
Rops8g04288 594 PANTHER SERINE/THREONINE-PROTEIN KINASE 126 569 - -
Rops8g04288 594 Gene3D Phosphorylase Kinase; domain 1 135 231 - -
Rops8g04288 594 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Rops8g04288 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Rops8g04288 594 FunFam CDPK-related kinase 1 135 230 - -
Rops8g04288 594 MobiDBLite consensus disorder prediction 1 127 - -
Rops8g04288 594 CDD STKc_CAMK 141 403 - -
Rops8g04288 594 FunFam CDPK-related kinase 3 134 306 - -
Rops8g04288 594 MobiDBLite consensus disorder prediction 111 126 - -
Rops8g04288 594 SUPERFAMILY EF-hand 433 583 IPR011992 -
Rops8g04288 594 MobiDBLite consensus disorder prediction 1 27 - -
Rops8g04288 594 Pfam Protein kinase domain 142 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04288 594 SMART serkin_6 142 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04288 594 ProSitePatterns Protein kinases ATP-binding region signature. 148 174 IPR017441 GO:0005524
Rops8g04288 594 SUPERFAMILY Protein kinase-like (PK-like) 141 427 IPR011009 -
Rops8g04288 594 FunFam CDPK-related kinase 1 440 512 - -
Rops8g04288 594 ProSiteProfiles Protein kinase domain profile. 142 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04288 Rops-Chr8 85742107 85749866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04288 16 588 EF-hand Containing Proteins AT3G50530 61.338 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops8g04288 Pkinase 9.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04288 - - psat:127132076 1072.77